Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 N 1.40435 * 126.73072 * 299.68710 * 4 2 1 6 6 C 1.32738 * 106.72614 * 179.83192 * 5 4 2 7 7 C 1.41288 * 125.65864 * 180.17411 * 6 5 4 8 8 H 1.08004 * 119.99957 * 0.32419 * 7 6 5 9 9 C 1.39863 * 120.00192 * 180.33079 * 7 6 5 10 10 N 1.30868 * 119.99484 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00025 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47231 * 89.99848 * 11 9 7 13 13 H 1.48500 * 109.46937 * 209.99851 * 11 9 7 14 14 H 1.48500 * 109.47296 * 329.99950 * 11 9 7 15 15 N 1.34766 * 108.68374 * 0.43192 * 6 5 4 16 16 C 1.30984 * 109.76027 * 359.71943 * 15 6 5 17 17 O 1.35331 * 125.85592 * 180.02562 * 16 15 6 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 22 22 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 0.97009 * 119.99443 * 180.02562 * 10 9 7 26 26 H 0.96696 * 114.00161 * 269.99715 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7728 -0.3327 2.5318 6 6 2.3976 -1.2270 3.2880 7 6 2.4104 -1.2460 4.7007 8 1 1.8753 -0.4897 5.2558 9 6 3.1163 -2.2440 5.3803 10 7 3.7644 -3.1606 4.7076 11 14 3.1338 -2.2687 7.2480 12 1 1.9953 -3.0836 7.7430 13 1 4.4100 -2.8609 7.7232 14 1 3.0100 -0.8812 7.7626 15 7 3.0223 -2.1106 2.4847 16 6 2.8035 -1.8010 1.2310 17 8 3.2767 -2.4712 0.1547 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6767 1.9563 -0.8900 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 4.2536 -3.8530 5.1790 26 1 4.1357 -2.1562 -0.1582 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323292.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = 13.881852 kcal Electronic energy + Delta-G solvation = -12485.860462 eV Core-core repulsion = 10179.739591 eV Total energy + Delta-G solvation = -2306.120871 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.96357 -38.21570 -36.77828 -35.07967 -31.33110 -30.89164 -28.14507 -27.86825 -23.52521 -22.43181 -21.16526 -19.34544 -18.86682 -17.14733 -16.67495 -16.15043 -15.33742 -14.99234 -14.77981 -13.88670 -13.75250 -13.40908 -13.09968 -13.04821 -12.81875 -12.63684 -12.32140 -12.10028 -11.87546 -11.39271 -11.15867 -10.08809 -10.02156 -9.83001 -8.38876 -6.53460 1.03516 1.45009 1.49340 1.61127 1.77099 2.31131 2.42494 3.13766 3.55139 3.75083 4.08035 4.17945 4.59130 4.67585 4.70677 4.84645 4.92429 5.07232 5.27047 5.37531 5.39772 5.97869 6.22432 6.24850 6.84876 6.85931 7.07483 8.05830 8.57549 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.055223 B = 0.010469 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.914256 B = 2673.926243 C = 2992.593055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.146 3.854 3 C -0.144 4.144 4 N -0.409 5.409 5 N -0.438 5.438 6 C 0.332 3.668 7 C -0.480 4.480 8 H 0.085 0.915 9 C 0.035 3.965 10 N -0.796 5.796 11 Si 0.999 3.001 12 H -0.263 1.263 13 H -0.266 1.266 14 H -0.257 1.257 15 N -0.543 5.543 16 C 0.398 3.602 17 O -0.451 6.451 18 H 0.107 0.893 19 H 0.044 0.956 20 H 0.040 0.960 21 H 0.114 0.886 22 H 0.106 0.894 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.280 0.720 26 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 4.423 -7.695 8.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 C -0.202 4.202 4 N -0.216 5.216 5 N -0.277 5.277 6 C 0.073 3.927 7 C -0.522 4.522 8 H 0.103 0.897 9 C -0.185 4.185 10 N -0.422 5.422 11 Si 0.819 3.181 12 H -0.188 1.188 13 H -0.190 1.190 14 H -0.180 1.180 15 N -0.283 5.283 16 C 0.084 3.916 17 O -0.253 6.253 18 H 0.125 0.875 19 H 0.063 0.937 20 H 0.059 0.941 21 H 0.132 0.868 22 H 0.124 0.876 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -1.368 4.182 -7.541 8.730 hybrid contribution 0.580 -0.090 0.268 0.646 sum -0.788 4.092 -7.272 8.382 Atomic orbital electron populations 1.22016 0.93500 1.01647 1.03308 1.21458 0.95925 0.94325 0.83887 1.22005 1.00769 0.94159 1.03281 1.51146 1.42276 1.21589 1.06559 1.78599 1.36488 1.27282 0.85340 1.21006 0.89732 0.86636 0.95365 1.18672 1.32601 1.13737 0.87156 0.89691 1.26855 0.92313 0.93082 1.06208 1.70164 1.22336 1.10458 1.39273 0.84973 0.78692 0.79679 0.74754 1.18768 1.19005 1.18045 1.71304 1.28914 1.30005 0.98034 1.22164 0.94740 0.86771 0.87966 1.84662 1.41964 1.57320 1.41368 0.87479 0.93654 0.94123 0.86816 0.87550 0.93755 0.93285 0.91030 0.72335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.47 71.98 0.68 -3.67 15 2 C 0.15 4.74 3.74 44.99 0.17 4.90 15 3 C -0.14 -4.00 9.47 71.98 0.68 -3.32 15 4 N -0.41 -18.88 3.33 -442.47 -1.47 -20.35 15 5 N -0.44 -24.40 12.68 -56.40 -0.72 -25.12 15 6 C 0.33 20.26 7.60 134.89 1.02 21.28 15 7 C -0.48 -28.70 9.49 23.41 0.22 -28.47 15 8 H 0.08 4.88 7.84 -2.91 -0.02 4.86 15 9 C 0.03 1.90 5.49 85.23 0.47 2.37 15 10 N -0.80 -45.95 11.89 21.81 0.26 -45.69 15 11 Si 1.00 40.88 29.56 68.60 2.03 42.91 15 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 13 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 14 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 15 N -0.54 -32.27 9.37 -311.69 -2.92 -35.19 15 16 C 0.40 19.58 9.13 179.80 1.64 21.22 15 17 O -0.45 -17.14 13.33 -86.20 -1.15 -18.29 15 18 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 19 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.04 1.30 8.14 -2.38 -0.02 1.28 15 21 H 0.11 3.02 7.83 -2.39 -0.02 3.00 15 22 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.28 14.54 8.30 -92.70 -0.77 13.77 15 26 H 0.42 10.77 9.06 -74.06 -0.67 10.10 15 Total: -1.00 -75.92 237.75 1.44 -74.48 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.52 Total: 12.92 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 4.89 Total: 14.32 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -4.85 Total: -126.35 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.15 Total: -18.29 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -75.92 1.44 -74.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323292.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.363 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds