Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35746 * 117.00140 * 2 1 4 4 C 1.35793 * 126.16050 * 183.32557 * 3 2 1 5 5 C 1.40485 * 107.82694 * 179.90386 * 4 3 2 6 6 N 1.39477 * 125.89703 * 180.16420 * 5 4 3 7 7 C 1.36846 * 119.99945 * 0.25479 * 6 5 4 8 8 H 1.07994 * 120.00406 * 359.97438 * 7 6 5 9 9 C 1.38759 * 119.99714 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00438 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99839 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47362 * 90.00200 * 11 9 7 13 13 H 1.48508 * 109.47087 * 209.99859 * 11 9 7 14 14 H 1.48502 * 109.47398 * 329.99786 * 11 9 7 15 15 N 1.31392 * 108.20548 * 0.35908 * 5 4 3 16 16 N 1.35779 * 126.15610 * 3.62821 * 3 2 1 17 17 C 1.46503 * 126.00387 * 359.93416 * 16 3 2 18 18 H 1.09006 * 109.47204 * 186.94451 * 1 2 3 19 19 H 1.08996 * 109.47355 * 306.93699 * 1 2 3 20 20 H 1.08999 * 109.47577 * 66.94334 * 1 2 3 21 21 H 1.08002 * 126.08430 * 359.97438 * 4 3 2 22 22 H 0.97005 * 119.99872 * 180.26102 * 6 5 4 23 23 H 0.97003 * 120.00604 * 180.02562 * 10 9 7 24 24 H 1.08998 * 109.46995 * 82.80092 * 17 16 3 25 25 H 1.09000 * 109.46745 * 202.79289 * 17 16 3 26 26 H 1.08997 * 109.47403 * 322.79665 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.3843 1.4265 -0.0636 5 6 3.5965 2.8150 -0.0402 6 7 4.8353 3.4539 -0.0915 7 6 5.9835 2.7144 -0.1777 8 1 5.9306 1.6361 -0.2057 9 6 7.2159 3.3501 -0.2282 10 7 7.2806 4.6642 -0.1925 11 14 8.7833 2.3406 -0.3452 12 1 9.1206 2.1138 -1.7736 13 1 9.8939 3.0725 0.3154 14 1 8.5817 1.0332 0.3295 15 7 2.4268 3.4078 0.0425 16 7 1.4342 2.4200 0.0694 17 6 -0.0098 2.6520 0.1563 18 1 -0.3634 -1.0202 0.1243 19 1 -0.3634 0.6175 0.8214 20 1 -0.3634 0.4025 -0.9455 21 1 4.1497 0.6668 -0.1229 22 1 4.8829 4.4224 -0.0658 23 1 8.1422 5.1086 -0.2282 24 1 -0.3320 2.5526 1.1928 25 1 -0.2384 3.6563 -0.2005 26 1 -0.5331 1.9199 -0.4587 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300930531.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = 43.337945 kcal Electronic energy + Delta-G solvation = -12237.748592 eV Core-core repulsion = 9932.905033 eV Total energy + Delta-G solvation = -2304.843559 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.07227 -39.17604 -36.82651 -34.11220 -32.54258 -30.45007 -28.14842 -26.93522 -25.82031 -22.30274 -21.30120 -19.41523 -18.69643 -17.37510 -16.70396 -16.44816 -16.11210 -15.39170 -15.22964 -14.99603 -14.44221 -14.09671 -13.69657 -13.25725 -13.06736 -12.51426 -12.32465 -12.02334 -11.95540 -11.49689 -11.05855 -10.42759 -9.13237 -8.77544 -8.27234 -5.62119 1.13736 1.47629 1.50434 1.60394 1.67896 2.17517 2.24605 2.43940 3.32508 3.39866 3.92489 4.16423 4.29752 4.41340 4.50453 4.65755 4.77086 4.81661 5.06373 5.31584 5.48768 5.66530 6.12027 6.73175 6.80934 7.10823 7.66231 7.94425 8.93685 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.067341 B = 0.008560 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.692281 B = 3270.375040 C = 3665.395772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.307 6.307 3 C 0.298 3.702 4 C -0.355 4.355 5 C 0.335 3.665 6 N -0.579 5.579 7 C -0.298 4.298 8 H 0.097 0.903 9 C -0.039 4.039 10 N -0.947 5.947 11 Si 1.001 2.999 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.262 1.262 15 N -0.420 5.420 16 N -0.415 5.415 17 C 0.082 3.918 18 H 0.133 0.867 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.136 0.864 22 H 0.392 0.608 23 H 0.269 0.731 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 -8.523 0.302 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.214 6.214 3 C 0.129 3.871 4 C -0.388 4.388 5 C 0.076 3.924 6 N -0.203 5.203 7 C -0.428 4.428 8 H 0.115 0.885 9 C -0.236 4.236 10 N -0.590 5.590 11 Si 0.825 3.175 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.186 1.186 15 N -0.265 5.265 16 N -0.211 5.211 17 C -0.058 4.058 18 H 0.151 0.849 19 H 0.094 0.906 20 H 0.092 0.908 21 H 0.154 0.846 22 H 0.225 0.775 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.987 -7.799 0.364 16.018 hybrid contribution 1.109 -0.297 -0.073 1.151 sum -12.878 -8.096 0.291 15.214 Atomic orbital electron populations 1.23992 0.75862 1.07006 1.02678 1.86240 1.24090 1.21203 1.89849 1.19325 0.90427 0.79845 0.97533 1.19896 0.93018 0.95154 1.30720 1.19258 0.87310 0.90790 0.95015 1.39803 0.99585 1.07250 1.73709 1.19770 0.83535 0.92239 1.47283 0.88525 1.26050 1.01941 0.97033 0.98550 1.69843 1.26751 1.08931 1.53468 0.84792 0.76613 0.77819 0.78308 1.20052 1.20859 1.18577 1.77470 0.94296 1.10008 1.44696 1.48671 1.07147 1.01477 1.63818 1.22609 0.73481 1.05683 1.04000 0.84921 0.90592 0.90810 0.84579 0.77497 0.92201 0.89816 0.89207 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.40 113.37 1.07 1.03 15 2 O -0.31 -9.40 10.57 -90.71 -0.96 -10.36 15 3 C 0.30 11.65 7.79 83.51 0.65 12.30 15 4 C -0.35 -16.81 10.03 22.25 0.22 -16.59 15 5 C 0.33 17.53 8.09 133.53 1.08 18.61 15 6 N -0.58 -33.02 5.46 -188.54 -1.03 -34.05 15 7 C -0.30 -17.02 9.70 84.04 0.82 -16.21 15 8 H 0.10 5.30 6.46 -2.91 -0.02 5.28 15 9 C -0.04 -2.18 5.50 84.85 0.47 -1.71 15 10 N -0.95 -55.99 13.05 21.64 0.28 -55.71 15 11 Si 1.00 44.01 29.55 68.60 2.03 46.04 15 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 14 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 15 N -0.42 -20.24 12.59 -54.75 -0.69 -20.93 15 16 N -0.41 -15.58 4.04 -480.52 -1.94 -17.52 15 17 C 0.08 1.85 9.60 127.77 1.23 3.08 15 18 H 0.13 1.38 8.14 -2.38 -0.02 1.36 15 19 H 0.08 1.07 5.82 -2.39 -0.01 1.06 15 20 H 0.07 1.02 6.62 -2.39 -0.02 1.00 15 21 H 0.14 6.39 7.09 -2.91 -0.02 6.37 15 22 H 0.39 23.25 8.01 -92.70 -0.74 22.51 15 23 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 24 H 0.08 1.54 7.64 -2.39 -0.02 1.52 15 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.12 1.77 4.66 -2.39 -0.01 1.76 15 Total: -1.00 -71.41 227.59 3.69 -67.72 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.47 Total: 24.30 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.53 Total: 0.50 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -3.38 Total: -128.21 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.96 Total: -10.36 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.41 3.69 -67.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300930531.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.056 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds