Wall clock time and date at job start Mon Mar 30 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99624 * 2 1 4 4 H 1.48498 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99665 * 3 2 1 6 6 H 1.48500 * 109.47343 * 59.99950 * 3 2 1 7 7 C 1.38809 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99594 * 164.36481 * 7 2 1 9 9 N 1.36936 * 120.00230 * 344.36996 * 7 2 1 10 10 C 1.45635 * 119.63925 * 155.33638 * 9 7 2 11 11 C 1.51062 * 111.03959 * 130.04920 * 10 9 7 12 12 C 1.51133 * 115.20987 * 46.34721 * 11 10 9 13 13 H 1.09004 * 108.35254 * 90.89001 * 12 11 10 14 14 O 1.45232 * 107.14839 * 208.31549 * 12 11 10 15 15 C 1.44362 * 107.74346 * 144.78700 * 14 12 11 16 16 C 1.55595 * 103.19871 * 322.39695 * 15 14 12 17 17 C 1.51081 * 116.43935 * 327.58080 * 12 11 10 18 18 H 1.09001 * 105.41327 * 136.62812 * 17 12 11 19 19 C 1.43372 * 119.75363 * 334.85819 * 9 7 2 20 20 H 0.96996 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.16674 * 9.64367 * 10 9 7 22 22 H 1.09002 * 109.16555 * 250.44596 * 10 9 7 23 23 H 1.09001 * 108.33190 * 284.86439 * 11 10 9 24 24 H 1.09002 * 108.33695 * 167.84080 * 11 10 9 25 25 H 1.08997 * 110.67592 * 203.96785 * 15 14 12 26 26 H 1.09004 * 110.81605 * 80.89250 * 15 14 12 27 27 H 1.08999 * 111.26951 * 281.96670 * 16 15 14 28 28 H 1.09003 * 111.26778 * 157.43687 * 16 15 14 29 29 H 1.09004 * 107.83657 * 94.09359 * 19 9 7 30 30 H 1.08993 * 107.92668 * 337.34028 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0603 -1.2194 -0.2515 9 7 1.3637 -2.3660 0.3206 10 6 1.8782 -3.6353 -0.1745 11 6 2.0062 -4.6420 0.9445 12 6 0.8098 -4.7395 1.8628 13 1 0.1372 -5.5023 1.4704 14 8 1.3004 -5.1658 3.1615 15 6 0.5015 -4.5114 4.1701 16 6 0.2591 -3.0969 3.5689 17 6 0.0310 -3.4651 2.0905 18 1 -1.0187 -3.7523 2.0303 19 6 0.1933 -2.3254 1.1476 20 1 -0.4850 0.8400 -0.0004 21 1 2.8579 -3.4735 -0.6241 22 1 1.1982 -4.0263 -0.9314 23 1 2.8780 -4.3794 1.5438 24 1 2.1815 -5.6237 0.5042 25 1 1.0495 -4.4414 5.1097 26 1 -0.4436 -5.0348 4.3156 27 1 1.1366 -2.4613 3.6873 28 1 -0.6259 -2.6298 4.0011 29 1 -0.6774 -2.2924 0.4926 30 1 0.2220 -1.4012 1.7246 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306192008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:50 Heat of formation + Delta-G solvation = -25.368952 kcal Electronic energy + Delta-G solvation = -13255.389047 eV Core-core repulsion = 11051.106476 eV Total energy + Delta-G solvation = -2204.282570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.53072 -36.09042 -32.51309 -32.18973 -29.84331 -28.24616 -25.17789 -22.57574 -22.15403 -21.48710 -17.90785 -16.95751 -15.61754 -15.47701 -15.21355 -14.30626 -13.67239 -13.55138 -13.00327 -12.71749 -12.36831 -11.75334 -11.28680 -11.06523 -10.91700 -10.85836 -10.67606 -10.20684 -10.06279 -9.88738 -9.64634 -9.58378 -9.03997 -8.41210 -6.67982 -5.76436 -3.19817 3.37374 3.45115 3.47706 4.26813 4.50310 5.08540 5.24403 5.33093 5.42122 5.46416 5.61929 5.67893 5.96574 5.99953 6.05353 6.31281 6.32894 6.48011 6.50665 6.64078 6.77848 6.80664 7.02507 7.30820 7.48837 7.72792 7.82686 8.47384 9.28657 9.93285 10.38646 11.30629 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049621 B = 0.011826 C = 0.010796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.141812 B = 2367.144545 C = 2593.028868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.586 5.586 10 C 0.154 3.846 11 C -0.134 4.134 12 C 0.104 3.896 13 H 0.054 0.946 14 O -0.390 6.390 15 C 0.045 3.955 16 C -0.143 4.143 17 C -0.126 4.126 18 H 0.050 0.950 19 C 0.191 3.809 20 H 0.253 0.747 21 H 0.058 0.942 22 H 0.013 0.987 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -6.706 5.244 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.047 3.953 13 H 0.072 0.928 14 O -0.310 6.310 15 C -0.032 4.032 16 C -0.181 4.181 17 C -0.146 4.146 18 H 0.069 0.931 19 C 0.064 3.936 20 H 0.063 0.937 21 H 0.076 0.924 22 H 0.030 0.970 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.106 -6.725 5.263 8.540 hybrid contribution 0.069 0.970 0.055 0.974 sum 0.175 -5.755 5.318 7.838 Atomic orbital electron populations 1.70095 1.05195 1.25290 1.54462 1.25022 0.95350 0.98345 1.00906 0.86207 0.79353 0.83891 0.77269 1.20222 1.21690 1.21572 1.19287 0.92433 0.84561 1.42199 0.91336 1.42776 1.31071 1.01618 1.55380 1.20108 0.97916 0.86551 0.92741 1.21338 0.98014 0.99727 0.98213 1.21665 0.95252 0.94607 0.83804 0.92830 1.89067 1.57456 1.69159 1.15348 1.23507 0.95034 0.92415 0.92236 1.23233 1.02586 0.96998 0.95285 1.21486 0.99334 0.97278 0.96525 0.93131 1.18987 0.89812 0.93822 0.90976 0.93732 0.92388 0.96967 0.91664 0.92732 0.89870 0.92972 0.90284 0.90651 0.95661 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.41 10.95 55.49 0.61 -25.80 16 2 C 0.00 0.06 4.89 -17.43 -0.09 -0.03 16 3 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.26 -7.10 9.49 -15.06 -0.14 -7.25 16 8 H 0.07 1.87 7.79 -52.49 -0.41 1.46 16 9 N -0.59 -15.09 3.06 -180.03 -0.55 -15.64 16 10 C 0.15 3.34 6.45 -5.48 -0.04 3.31 16 11 C -0.13 -2.55 5.60 -28.65 -0.16 -2.71 16 12 C 0.10 1.96 3.68 -28.64 -0.11 1.86 16 13 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 14 O -0.39 -7.24 10.94 -35.23 -0.39 -7.62 16 15 C 0.04 0.69 7.76 38.54 0.30 0.99 16 16 C -0.14 -2.48 6.51 -24.80 -0.16 -2.64 16 17 C -0.13 -2.50 2.57 -93.09 -0.24 -2.74 16 18 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 19 C 0.19 4.67 4.52 -7.75 -0.04 4.63 16 20 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 21 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 1.30 7.94 -51.93 -0.41 0.89 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.03 0.69 7.73 -51.93 -0.40 0.28 16 30 H 0.07 1.90 6.12 -51.93 -0.32 1.59 16 LS Contribution 238.05 15.07 3.59 3.59 Total: -1.00 -29.83 238.05 -6.89 -36.72 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.46 Total: -3.43 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.67 Total: -4.59 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.06 Total: -41.45 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.39 Total: -7.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.83 -6.89 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.356 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds