Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48499 * 109.47274 * 272.14851 * 3 2 1 5 5 H 1.48504 * 109.47381 * 32.15087 * 3 2 1 6 6 H 1.48498 * 109.46857 * 152.14956 * 3 2 1 7 7 C 1.38811 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99907 * 339.42556 * 7 2 1 9 9 N 1.36936 * 120.00084 * 159.42899 * 7 2 1 10 10 C 1.46790 * 119.44706 * 331.97434 * 9 7 2 11 11 C 1.53492 * 107.45364 * 231.82888 * 10 9 7 12 12 C 1.52712 * 108.35720 * 301.46080 * 11 10 9 13 13 C 1.53011 * 110.93758 * 63.93768 * 12 11 10 14 14 H 1.08995 * 112.56000 * 71.77864 * 13 12 11 15 15 C 1.55116 * 106.95667 * 195.67448 * 13 12 11 16 16 O 1.43317 * 107.44928 * 93.27201 * 15 13 12 17 17 C 1.43922 * 109.97681 * 359.61117 * 16 15 13 18 18 C 1.44890 * 119.44577 * 151.94868 * 9 7 2 19 19 H 1.09004 * 109.87904 * 13.10635 * 18 9 7 20 20 H 0.97004 * 120.00113 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.86414 * 112.33892 * 10 9 7 22 22 H 1.09005 * 109.91517 * 351.34194 * 10 9 7 23 23 H 1.09000 * 109.69647 * 61.18413 * 11 10 9 24 24 H 1.08999 * 109.69698 * 181.73243 * 11 10 9 25 25 H 1.09001 * 109.17319 * 184.36504 * 12 11 10 26 26 H 1.08996 * 109.17191 * 303.59403 * 12 11 10 27 27 H 1.09004 * 109.85173 * 212.74141 * 15 13 12 28 28 H 1.08997 * 109.85145 * 333.79915 * 15 13 12 29 29 H 1.08997 * 110.39664 * 264.86032 * 17 16 15 30 30 H 1.09003 * 110.39090 * 142.45970 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4522 2.0728 -1.3991 5 1 1.4711 2.6392 0.7451 6 1 3.5697 1.4275 0.6541 7 6 2.0103 -1.2021 0.0005 8 1 1.5220 -2.1074 0.3296 9 7 3.3141 -1.2401 -0.4161 10 6 3.7874 -0.2556 -1.3967 11 6 4.4663 -1.0295 -2.5352 12 6 5.6098 -1.8507 -1.9435 13 6 5.0789 -2.9062 -0.9713 14 1 4.5636 -3.7212 -1.4795 15 6 6.2889 -3.4018 -0.1367 16 8 6.3372 -2.6142 1.0596 17 6 5.2676 -1.6512 1.0579 18 6 4.2037 -2.2510 0.1187 19 1 3.6262 -3.0148 0.6397 20 1 -0.4850 0.8401 -0.0004 21 1 4.5043 0.4186 -0.9282 22 1 2.9442 0.3140 -1.7876 23 1 3.7441 -1.6940 -3.0095 24 1 4.8599 -0.3291 -3.2718 25 1 6.1503 -2.3453 -2.7506 26 1 6.2908 -1.1855 -1.4126 27 1 6.1572 -4.4536 0.1176 28 1 7.2096 -3.2692 -0.7048 29 1 5.6188 -0.6942 0.6721 30 1 4.8629 -1.5313 2.0629 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = -25.388054 kcal Electronic energy + Delta-G solvation = -13444.042168 eV Core-core repulsion = 11239.758770 eV Total energy + Delta-G solvation = -2204.283399 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75258 -36.19956 -33.19769 -31.23195 -30.59365 -27.93883 -25.17100 -23.31301 -21.98150 -21.24596 -18.77754 -16.89631 -16.03790 -15.55251 -14.92491 -14.59701 -13.98275 -13.42988 -12.99857 -12.84768 -12.72909 -12.17176 -11.93965 -11.59337 -11.10803 -10.81809 -10.55754 -10.50148 -10.11124 -9.83478 -9.65940 -9.52357 -9.04734 -8.65738 -7.05003 -6.01786 -3.40212 3.27727 3.44637 3.46646 4.27048 4.46919 4.90884 5.02516 5.14558 5.29598 5.38719 5.55899 5.70599 5.77188 5.78362 5.96153 6.02991 6.12162 6.25196 6.32106 6.35910 6.50839 6.53863 6.65074 6.71667 6.90637 7.39128 7.93436 8.28094 8.89835 9.65481 9.98187 11.13680 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.014088 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.221355 B = 1987.087642 C = 2107.963024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.882 3.118 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.271 4.271 8 H 0.087 0.913 9 N -0.586 5.586 10 C 0.123 3.877 11 C -0.135 4.135 12 C -0.104 4.104 13 C -0.138 4.138 14 H 0.092 0.908 15 C 0.055 3.945 16 O -0.394 6.394 17 C 0.027 3.973 18 C 0.161 3.839 19 H 0.081 0.919 20 H 0.264 0.736 21 H 0.026 0.974 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 -3.212 -3.062 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.712 3.288 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.399 4.399 8 H 0.104 0.896 9 N -0.307 5.307 10 C -0.002 4.002 11 C -0.174 4.174 12 C -0.142 4.142 13 C -0.158 4.158 14 H 0.110 0.890 15 C -0.022 4.022 16 O -0.312 6.312 17 C -0.052 4.052 18 C 0.051 3.949 19 H 0.099 0.901 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.438 -3.133 -2.887 11.274 hybrid contribution 0.293 1.068 -0.152 1.118 sum 10.731 -2.065 -3.039 11.342 Atomic orbital electron populations 1.69831 1.05753 1.26706 1.52336 1.25275 0.95202 0.97585 0.99018 0.86992 0.80037 0.84589 0.77194 1.21442 1.22994 1.19546 1.18964 0.84855 0.94963 1.41156 0.89561 1.43692 1.08221 1.33633 1.45165 1.21477 0.97623 0.91739 0.89376 1.21950 0.97849 0.99298 0.98293 1.21418 0.97698 0.97241 0.97794 1.23015 0.96413 0.98785 0.97634 0.89008 1.23270 0.97680 0.94932 0.86351 1.88376 1.52225 1.50264 1.40377 1.23982 0.87685 0.91939 1.01573 1.21265 0.90598 0.91815 0.91185 0.90060 0.92623 0.95571 0.90510 0.91418 0.92628 0.92861 0.92461 0.92079 0.92126 0.92812 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.97 55.49 0.78 -26.59 16 2 C 0.03 0.82 5.19 -17.43 -0.09 0.73 16 3 Si 0.88 22.11 24.26 -169.99 -4.12 17.98 16 4 H -0.29 -6.92 6.61 56.52 0.37 -6.54 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.67 6.67 56.52 0.38 -6.29 16 7 C -0.27 -7.46 9.91 -15.06 -0.15 -7.61 16 8 H 0.09 2.53 8.00 -52.49 -0.42 2.11 16 9 N -0.59 -13.74 2.54 -164.83 -0.42 -14.15 16 10 C 0.12 2.66 3.92 -3.63 -0.01 2.65 16 11 C -0.13 -2.38 6.11 -26.62 -0.16 -2.54 16 12 C -0.10 -1.64 4.66 -26.87 -0.13 -1.77 16 13 C -0.14 -2.29 3.67 -88.77 -0.33 -2.61 16 14 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.05 0.83 7.15 38.28 0.27 1.10 16 16 O -0.39 -7.15 11.37 -35.23 -0.40 -7.55 16 17 C 0.03 0.52 7.00 37.72 0.26 0.78 16 18 C 0.16 3.24 3.18 -67.51 -0.21 3.02 16 19 H 0.08 1.67 7.86 -51.93 -0.41 1.26 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.03 0.57 6.39 -51.93 -0.33 0.24 16 22 H 0.08 1.82 4.66 -51.93 -0.24 1.57 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.93 7.24 -51.93 -0.38 0.55 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 29 H 0.05 1.07 7.00 -51.93 -0.36 0.71 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 229.38 15.07 3.46 3.46 Total: -1.00 -29.51 229.38 -5.52 -35.04 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.27 Total: -1.93 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.54 Total: -6.25 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.36 Total: -40.75 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.40 Total: -7.55 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.12 Total: 17.98 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.51 -5.52 -35.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.648 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds