Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48499 * 109.47274 * 272.14851 * 3 2 1 5 5 H 1.48504 * 109.47381 * 32.15087 * 3 2 1 6 6 H 1.48498 * 109.46857 * 152.14956 * 3 2 1 7 7 C 1.38811 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99907 * 339.42556 * 7 2 1 9 9 N 1.36936 * 120.00084 * 159.42899 * 7 2 1 10 10 C 1.46790 * 119.44706 * 331.97434 * 9 7 2 11 11 C 1.53492 * 107.45364 * 231.82888 * 10 9 7 12 12 C 1.52712 * 108.35720 * 301.46080 * 11 10 9 13 13 C 1.53011 * 110.93758 * 63.93768 * 12 11 10 14 14 H 1.08995 * 112.56000 * 71.77864 * 13 12 11 15 15 C 1.55116 * 106.95667 * 195.67448 * 13 12 11 16 16 O 1.43317 * 107.44928 * 93.27201 * 15 13 12 17 17 C 1.43922 * 109.97681 * 359.61117 * 16 15 13 18 18 C 1.44890 * 119.44577 * 151.94868 * 9 7 2 19 19 H 1.09004 * 109.87904 * 13.10635 * 18 9 7 20 20 H 0.97004 * 120.00113 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.86414 * 112.33892 * 10 9 7 22 22 H 1.09005 * 109.91517 * 351.34194 * 10 9 7 23 23 H 1.09000 * 109.69647 * 61.18413 * 11 10 9 24 24 H 1.08999 * 109.69698 * 181.73243 * 11 10 9 25 25 H 1.09001 * 109.17319 * 184.36504 * 12 11 10 26 26 H 1.08996 * 109.17191 * 303.59403 * 12 11 10 27 27 H 1.09004 * 109.85173 * 212.74141 * 15 13 12 28 28 H 1.08997 * 109.85145 * 333.79915 * 15 13 12 29 29 H 1.08997 * 110.39664 * 264.86032 * 17 16 15 30 30 H 1.09003 * 110.39090 * 142.45970 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4522 2.0728 -1.3991 5 1 1.4711 2.6392 0.7451 6 1 3.5697 1.4275 0.6541 7 6 2.0103 -1.2021 0.0005 8 1 1.5220 -2.1074 0.3296 9 7 3.3141 -1.2401 -0.4161 10 6 3.7874 -0.2556 -1.3967 11 6 4.4663 -1.0295 -2.5352 12 6 5.6098 -1.8507 -1.9435 13 6 5.0789 -2.9062 -0.9713 14 1 4.5636 -3.7212 -1.4795 15 6 6.2889 -3.4018 -0.1367 16 8 6.3372 -2.6142 1.0596 17 6 5.2676 -1.6512 1.0579 18 6 4.2037 -2.2510 0.1187 19 1 3.6262 -3.0148 0.6397 20 1 -0.4850 0.8401 -0.0004 21 1 4.5043 0.4186 -0.9282 22 1 2.9442 0.3140 -1.7876 23 1 3.7441 -1.6940 -3.0095 24 1 4.8599 -0.3291 -3.2718 25 1 6.1503 -2.3453 -2.7506 26 1 6.2908 -1.1855 -1.4126 27 1 6.1572 -4.4536 0.1176 28 1 7.2096 -3.2692 -0.7048 29 1 5.6188 -0.6942 0.6721 30 1 4.8629 -1.5313 2.0629 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = -45.877213 kcal Electronic energy + Delta-G solvation = -13444.930645 eV Core-core repulsion = 11239.758770 eV Total energy + Delta-G solvation = -2205.171875 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21455 -37.81084 -34.93788 -33.13248 -32.09535 -29.48868 -26.84573 -25.11489 -23.48695 -22.66123 -20.37038 -18.80600 -17.65088 -17.18737 -16.59185 -16.05644 -15.55520 -15.03886 -14.74445 -14.43938 -14.32557 -13.73819 -13.58757 -13.25799 -12.74388 -12.48189 -12.24312 -12.11090 -11.68330 -11.53338 -11.39975 -11.13163 -10.69544 -10.42675 -8.96952 -8.21275 -5.55769 1.27324 1.39253 1.47479 2.37241 2.79915 3.07067 3.37048 3.64817 3.90239 4.03476 4.10908 4.25787 4.31811 4.35644 4.55617 4.70381 4.75430 4.81318 4.89219 5.00382 5.04434 5.10063 5.20226 5.26714 5.50085 5.83225 6.01882 6.11240 6.89723 7.58877 7.93111 8.98199 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.014088 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.221355 B = 1987.087642 C = 2107.963024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.027 4.027 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.310 1.310 6 H -0.263 1.263 7 C -0.260 4.260 8 H 0.052 0.948 9 N -0.597 5.597 10 C 0.114 3.886 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.132 4.132 14 H 0.101 0.899 15 C 0.054 3.946 16 O -0.402 6.402 17 C 0.037 3.963 18 C 0.148 3.852 19 H 0.065 0.935 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.184 -3.316 -4.235 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.222 4.222 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.239 1.239 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.070 0.930 9 N -0.319 5.319 10 C -0.010 4.010 11 C -0.167 4.167 12 C -0.138 4.138 13 C -0.152 4.152 14 H 0.119 0.881 15 C -0.022 4.022 16 O -0.321 6.321 17 C -0.042 4.042 18 C 0.040 3.960 19 H 0.083 0.917 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.216 -3.259 -4.076 14.209 hybrid contribution -0.549 0.972 0.217 1.138 sum 12.667 -2.287 -3.859 13.438 Atomic orbital electron populations 1.69956 1.07424 1.27386 1.55040 1.25880 0.95770 1.00852 0.99728 0.85975 0.78655 0.80228 0.77880 1.19635 1.23903 1.18751 1.18893 0.86695 0.93698 1.39669 0.93016 1.43737 1.07273 1.34772 1.46152 1.21559 0.97134 0.91887 0.90397 1.21883 0.98099 0.99512 0.97192 1.21435 0.96988 0.96849 0.98517 1.22992 0.96094 0.99089 0.97013 0.88085 1.23481 0.98052 0.95372 0.85286 1.88368 1.51445 1.50302 1.42026 1.23712 0.87646 0.92057 1.00740 1.21418 0.90730 0.90884 0.93014 0.91720 0.92774 0.95048 0.92846 0.92267 0.89760 0.89221 0.92438 0.90240 0.89413 0.93138 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.97 21.65 0.30 -59.24 16 2 C -0.03 -1.56 5.19 84.86 0.44 -1.12 16 3 Si 0.94 46.14 24.26 68.60 1.66 47.81 16 4 H -0.27 -12.34 6.61 99.48 0.66 -11.68 16 5 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 6 H -0.26 -12.36 6.67 99.48 0.66 -11.70 16 7 C -0.26 -14.68 9.91 84.03 0.83 -13.84 16 8 H 0.05 3.20 8.00 -2.91 -0.02 3.18 16 9 N -0.60 -27.74 2.54 -675.40 -1.71 -29.46 16 10 C 0.11 4.75 3.92 86.49 0.34 5.09 16 11 C -0.13 -4.09 6.11 30.66 0.19 -3.90 16 12 C -0.10 -2.73 4.66 30.50 0.14 -2.59 16 13 C -0.13 -3.94 3.67 -9.59 -0.04 -3.98 16 14 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 15 C 0.05 1.43 7.15 72.71 0.52 1.95 16 16 O -0.40 -13.50 11.37 -148.98 -1.69 -15.19 16 17 C 0.04 1.38 7.00 72.34 0.51 1.89 16 18 C 0.15 5.80 3.18 46.13 0.15 5.95 16 19 H 0.06 2.69 7.86 -2.39 -0.02 2.67 16 20 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 21 H 0.03 1.28 6.39 -2.39 -0.02 1.27 16 22 H 0.05 2.46 4.66 -2.38 -0.01 2.45 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.60 7.24 -2.39 -0.02 1.58 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 1.90 7.73 -2.39 -0.02 1.88 16 29 H 0.05 1.91 7.00 -2.39 -0.02 1.89 16 30 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -64.25 229.38 2.66 -61.59 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.02 Total: 5.04 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 3.08 Total: -10.55 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -1.41 Total: -88.70 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.69 Total: -15.19 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.66 Total: 47.81 kcal Total: -64.25 2.66 -61.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.709 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds