Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50700 * 113.53579 * 270.81164 * 4 3 2 6 6 O 1.21281 * 120.00003 * 97.49556 * 5 4 3 7 7 N 1.34772 * 119.99908 * 277.48956 * 5 4 3 8 8 C 1.46497 * 119.99808 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47141 * 180.02562 * 8 7 5 10 10 H 1.08004 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00142 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00377 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00008 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47184 * 89.99533 * 13 11 9 15 15 H 1.48497 * 109.47478 * 209.99515 * 13 11 9 16 16 H 1.48494 * 109.47227 * 329.99940 * 13 11 9 17 17 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 18 18 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 19 19 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 20 20 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 21 21 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 22 22 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 23 23 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 24 24 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 25 25 H 0.96996 * 120.00038 * 0.02562 * 7 5 4 26 26 H 1.09001 * 109.47285 * 300.00005 * 8 7 5 27 27 H 1.09000 * 109.47627 * 60.00567 * 8 7 5 28 28 H 0.96994 * 120.00469 * 180.02562 * 12 11 9 29 29 H 1.09006 * 113.61506 * 254.52982 * 17 2 1 30 30 H 1.08996 * 113.61642 * 25.43366 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 4.4073 0.2776 -0.3176 6 8 4.4864 -0.9204 -0.1465 7 7 5.4059 1.0844 0.0927 8 6 6.5871 0.5140 0.7450 9 6 7.5461 1.6199 1.1035 10 1 7.3004 2.6450 0.8685 11 6 8.7375 1.3229 1.7305 12 7 9.0370 0.0747 2.0163 13 14 9.9265 2.6937 2.1742 14 1 9.6193 3.1932 3.5386 15 1 11.3170 2.1736 2.1390 16 1 9.7884 3.8040 1.1980 17 6 2.1460 -0.1865 -1.3966 18 1 -0.3633 -0.9603 -0.3660 19 1 -0.3633 0.7971 -0.6487 20 1 -0.3634 0.1632 1.0147 21 1 1.9533 -0.6616 0.7559 22 1 1.4945 2.1704 -0.4289 23 1 2.5650 1.7024 0.9626 24 1 3.4444 1.5619 -1.7878 25 1 5.3425 2.0426 -0.0439 26 1 6.2840 -0.0113 1.6507 27 1 7.0755 -0.1848 0.0659 28 1 9.8750 -0.1342 2.4578 29 1 2.5651 -1.1795 -1.5599 30 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306353455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -38.494534 kcal Electronic energy + Delta-G solvation = -12316.666954 eV Core-core repulsion = 10111.815216 eV Total energy + Delta-G solvation = -2204.851738 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.93294 -37.09823 -34.12095 -32.30034 -30.00116 -27.33795 -25.47639 -24.06124 -22.08270 -20.34365 -18.79355 -16.75843 -15.82627 -15.29081 -14.82516 -14.73686 -14.03689 -13.64925 -13.34398 -12.81232 -12.28941 -12.01761 -11.82371 -11.71320 -11.16192 -10.96137 -10.86673 -10.76125 -10.30956 -10.04133 -9.99752 -9.38453 -8.95165 -8.72278 -7.85078 -6.15757 -4.22703 3.24747 3.30772 3.33372 3.37264 4.09304 4.37813 4.69500 4.79282 4.95697 5.03897 5.20323 5.49918 5.60734 5.75673 5.77176 5.81619 5.86422 6.02313 6.08927 6.30402 6.43629 6.63315 7.33017 7.47554 7.53245 7.68800 7.98437 8.66816 8.80108 9.14907 9.44263 10.94562 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076990 B = 0.006873 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.595787 B = 4072.809863 C = 4211.336840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.122 4.122 4 C -0.140 4.140 5 C 0.515 3.485 6 O -0.555 6.555 7 N -0.710 5.710 8 C 0.249 3.751 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.118 4.118 18 H 0.054 0.946 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.391 0.609 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.266 0.734 29 H 0.080 0.920 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 3.986 -4.733 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 C -0.160 4.160 4 C -0.162 4.162 5 C 0.299 3.701 6 O -0.435 6.435 7 N -0.358 5.358 8 C 0.128 3.872 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.155 4.155 18 H 0.073 0.927 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.112 0.888 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.223 0.777 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.689 3.002 -4.508 13.797 hybrid contribution 0.793 1.197 0.212 1.452 sum -11.895 4.200 -4.296 13.327 Atomic orbital electron populations 1.21717 0.95165 1.01414 1.01375 1.22517 0.95021 0.97334 0.98491 1.22962 0.96795 0.96922 0.99292 1.22454 0.93943 1.00031 0.99754 1.19953 0.83765 0.87045 0.79305 1.90634 1.80301 1.15235 1.57302 1.46425 1.20200 1.10049 1.59136 1.19104 0.80808 0.94593 0.92687 1.21237 1.03233 0.93276 1.40383 0.91903 1.24955 0.97894 0.95862 0.95319 1.69973 1.24199 1.17550 1.40642 0.86410 0.80027 0.81586 0.78857 1.20455 1.20995 1.19745 1.22814 0.96203 0.99869 0.96639 0.92684 0.92866 0.92864 0.88804 0.89583 0.91059 0.88853 0.77696 0.95602 0.95574 0.92450 0.90150 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.70 37.16 0.36 -1.09 16 2 C -0.12 -1.54 4.00 -89.81 -0.36 -1.90 16 3 C -0.12 -1.56 7.22 -25.83 -0.19 -1.75 16 4 C -0.14 -2.10 4.35 -90.86 -0.40 -2.49 16 5 C 0.51 10.60 7.08 -10.99 -0.08 10.52 16 6 O -0.56 -13.67 15.75 5.56 0.09 -13.58 16 7 N -0.71 -15.41 5.55 -61.47 -0.34 -15.75 16 8 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 9 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 10 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 13 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 C -0.12 -1.61 7.02 -25.92 -0.18 -1.79 16 18 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 19 H 0.05 0.48 7.98 -51.93 -0.41 0.07 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 22 H 0.09 0.89 7.99 -51.93 -0.41 0.47 16 23 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.39 7.31 8.32 -40.82 -0.34 6.97 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 29 H 0.08 1.27 7.43 -51.93 -0.39 0.88 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 257.57 15.07 3.88 3.88 Total: -1.00 -31.50 257.57 -6.40 -37.90 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.46 Total: 2.61 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.29 Total: -5.37 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.40 Total: -41.41 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.50 -6.40 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306353455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.593 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds