Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50700 * 113.53579 * 270.81164 * 4 3 2 6 6 O 1.21281 * 120.00003 * 97.49556 * 5 4 3 7 7 N 1.34772 * 119.99908 * 277.48956 * 5 4 3 8 8 C 1.46497 * 119.99808 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47141 * 180.02562 * 8 7 5 10 10 H 1.08004 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00142 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00377 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00008 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47184 * 89.99533 * 13 11 9 15 15 H 1.48497 * 109.47478 * 209.99515 * 13 11 9 16 16 H 1.48494 * 109.47227 * 329.99940 * 13 11 9 17 17 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 18 18 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 19 19 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 20 20 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 21 21 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 22 22 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 23 23 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 24 24 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 25 25 H 0.96996 * 120.00038 * 0.02562 * 7 5 4 26 26 H 1.09001 * 109.47285 * 300.00005 * 8 7 5 27 27 H 1.09000 * 109.47627 * 60.00567 * 8 7 5 28 28 H 0.96994 * 120.00469 * 180.02562 * 12 11 9 29 29 H 1.09006 * 113.61506 * 254.52982 * 17 2 1 30 30 H 1.08996 * 113.61642 * 25.43366 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 4.4073 0.2776 -0.3176 6 8 4.4864 -0.9204 -0.1465 7 7 5.4059 1.0844 0.0927 8 6 6.5871 0.5140 0.7450 9 6 7.5461 1.6199 1.1035 10 1 7.3004 2.6450 0.8685 11 6 8.7375 1.3229 1.7305 12 7 9.0370 0.0747 2.0163 13 14 9.9265 2.6937 2.1742 14 1 9.6193 3.1932 3.5386 15 1 11.3170 2.1736 2.1390 16 1 9.7884 3.8040 1.1980 17 6 2.1460 -0.1865 -1.3966 18 1 -0.3633 -0.9603 -0.3660 19 1 -0.3633 0.7971 -0.6487 20 1 -0.3634 0.1632 1.0147 21 1 1.9533 -0.6616 0.7559 22 1 1.4945 2.1704 -0.4289 23 1 2.5650 1.7024 0.9626 24 1 3.4444 1.5619 -1.7878 25 1 5.3425 2.0426 -0.0439 26 1 6.2840 -0.0113 1.6507 27 1 7.0755 -0.1848 0.0659 28 1 9.8750 -0.1342 2.4578 29 1 2.5651 -1.1795 -1.5599 30 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306353455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -60.569514 kcal Electronic energy + Delta-G solvation = -12317.624197 eV Core-core repulsion = 10111.815216 eV Total energy + Delta-G solvation = -2205.808981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.36353 -38.58068 -36.12849 -34.36352 -31.11708 -29.30146 -26.54097 -25.69649 -23.79703 -21.82269 -20.34321 -18.53318 -17.49197 -17.08785 -16.35631 -16.32812 -15.60806 -15.12967 -14.46364 -14.36455 -14.01246 -13.83055 -13.26179 -12.92113 -12.80357 -12.72460 -12.26103 -12.17151 -11.86877 -11.51120 -11.11494 -11.06487 -10.82296 -10.66765 -9.85488 -8.31068 -6.48426 1.42232 1.45039 1.56448 1.72388 2.31154 2.57743 3.03692 3.60601 3.68262 3.81008 3.90215 4.29012 4.55791 4.72908 4.82061 4.86616 4.92114 4.98400 5.06988 5.19744 5.22213 5.26532 5.42024 5.46865 5.61207 5.68686 5.82621 6.62739 6.90230 7.21318 7.48387 8.81440 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076990 B = 0.006873 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.595787 B = 4072.809863 C = 4211.336840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.508 3.492 6 O -0.604 6.604 7 N -0.706 5.706 8 C 0.265 3.735 9 C -0.557 4.557 10 H 0.084 0.916 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.988 3.012 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.254 1.254 17 C -0.112 4.112 18 H 0.057 0.943 19 H 0.077 0.923 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.129 0.871 23 H 0.056 0.944 24 H 0.127 0.873 25 H 0.408 0.592 26 H -0.015 1.015 27 H -0.014 1.014 28 H 0.269 0.731 29 H 0.049 0.951 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.176 6.901 -5.638 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C -0.145 4.145 4 C -0.161 4.161 5 C 0.295 3.705 6 O -0.486 6.486 7 N -0.355 5.355 8 C 0.142 3.858 9 C -0.595 4.595 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.810 3.190 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.178 1.178 17 C -0.150 4.150 18 H 0.076 0.924 19 H 0.096 0.904 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.147 0.853 23 H 0.075 0.925 24 H 0.145 0.855 25 H 0.244 0.756 26 H 0.003 0.997 27 H 0.004 0.996 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.966 5.953 -5.433 16.125 hybrid contribution 1.142 0.200 0.485 1.257 sum -12.824 6.153 -4.947 15.060 Atomic orbital electron populations 1.21671 0.92403 1.02567 1.02293 1.22481 0.97297 0.97139 0.97240 1.23030 0.95937 0.97346 0.98158 1.22456 0.91567 1.01200 1.00849 1.21098 0.84798 0.86385 0.78172 1.90609 1.81378 1.17688 1.58973 1.46186 1.19144 1.11095 1.59045 1.18546 0.82639 0.94191 0.90398 1.21621 1.03441 0.94005 1.40416 0.89751 1.26108 1.00068 0.98676 0.94820 1.70141 1.25039 1.20402 1.41532 0.85115 0.76732 0.78062 0.79047 1.19520 1.20886 1.17816 1.22905 0.96075 0.97970 0.98049 0.92439 0.90373 0.92540 0.92884 0.85276 0.92477 0.85476 0.75594 0.99733 0.99631 0.92196 0.93231 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.70 71.98 0.70 -1.66 16 2 C -0.12 -3.12 4.00 -10.27 -0.04 -3.16 16 3 C -0.11 -2.43 7.22 31.18 0.23 -2.21 16 4 C -0.14 -3.89 4.35 -10.95 -0.05 -3.94 16 5 C 0.51 21.36 7.08 87.66 0.62 21.98 16 6 O -0.60 -31.49 15.75 -3.03 -0.05 -31.54 16 7 N -0.71 -31.15 5.55 -466.79 -2.59 -33.74 16 8 C 0.27 15.06 5.43 85.63 0.46 15.53 16 9 C -0.56 -30.94 9.28 25.60 0.24 -30.70 16 10 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 11 C 0.00 0.16 5.46 84.65 0.46 0.62 16 12 N -0.93 -57.21 13.29 21.44 0.28 -56.93 16 13 Si 0.99 42.68 29.54 68.60 2.03 44.70 16 14 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 17 C -0.11 -2.86 7.02 31.12 0.22 -2.64 16 18 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 19 H 0.08 1.04 7.98 -2.39 -0.02 1.02 16 20 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 21 H 0.05 1.76 8.07 -2.38 -0.02 1.74 16 22 H 0.13 1.92 7.99 -2.39 -0.02 1.90 16 23 H 0.06 1.48 8.09 -2.39 -0.02 1.46 16 24 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.41 14.89 8.32 -92.71 -0.77 14.12 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.05 1.57 7.43 -2.38 -0.02 1.56 16 30 H 0.12 2.14 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -72.52 257.57 2.86 -69.66 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.35 Total: 14.02 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 2.84 Total: -6.18 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -2.30 Total: -90.67 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.54 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.52 2.86 -69.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306353455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.091 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds