Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47747 * 125.88481 * 359.68946 * 9 7 2 11 11 C 1.55267 * 104.73546 * 155.92206 * 10 9 7 12 12 C 1.55400 * 101.59326 * 36.78053 * 11 10 9 13 13 C 1.45909 * 125.88614 * 179.97438 * 9 7 2 14 14 C 1.54278 * 111.29802 * 59.38119 * 13 9 7 15 15 C 1.55127 * 100.83844 * 272.85280 * 14 13 9 16 16 O 1.43748 * 105.24607 * 324.55087 * 15 14 13 17 17 C 1.43504 * 109.91987 * 24.26112 * 16 15 14 18 18 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 19 19 H 1.08999 * 110.35995 * 274.87281 * 10 9 7 20 20 H 1.08997 * 110.36144 * 37.18359 * 10 9 7 21 21 H 1.08994 * 111.19966 * 278.63829 * 11 10 9 22 22 H 1.08996 * 110.86428 * 154.76848 * 11 10 9 23 23 H 1.08999 * 110.77730 * 206.88809 * 12 11 10 24 24 H 1.08997 * 110.94652 * 83.52899 * 12 11 10 25 25 H 1.09000 * 111.13986 * 30.74136 * 14 13 9 26 26 H 1.08991 * 111.14334 * 154.95702 * 14 13 9 27 27 H 1.09002 * 110.29166 * 205.61151 * 15 14 13 28 28 H 1.08997 * 110.37710 * 83.53754 * 15 14 13 29 29 H 1.09006 * 109.87235 * 238.13718 * 17 16 15 30 30 H 1.08997 * 109.87898 * 116.99672 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1440 -2.5396 0.0065 11 6 -0.3989 -3.9423 -0.6085 12 6 0.7929 -4.7568 -0.0333 13 6 1.9218 -3.7198 0.0005 14 6 2.8189 -3.9321 1.2375 15 6 4.1678 -3.3670 0.7201 16 8 4.2172 -3.7220 -0.6720 17 6 2.8870 -3.9127 -1.1755 18 1 -0.4850 0.8401 0.0004 19 1 -0.5258 -2.4946 1.0265 20 1 -0.6074 -1.7671 -0.6072 21 1 -0.3592 -3.9084 -1.6972 22 1 -1.3506 -4.3489 -0.2666 23 1 1.0492 -5.5856 -0.6932 24 1 0.5694 -5.1185 0.9704 25 1 2.4543 -3.3598 2.0905 26 1 2.9046 -4.9903 1.4840 27 1 4.9996 -3.8238 1.2563 28 1 4.1943 -2.2834 0.8350 29 1 2.7840 -4.9206 -1.5779 30 1 2.6759 -3.1780 -1.9524 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306423430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -37.757197 kcal Electronic energy + Delta-G solvation = -13476.159015 eV Core-core repulsion = 11271.339250 eV Total energy + Delta-G solvation = -2204.819765 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.01644 -37.71542 -34.61832 -32.11615 -31.11861 -29.88669 -26.69329 -25.18608 -23.38289 -21.86964 -20.59411 -18.65600 -17.79262 -16.72275 -16.20012 -15.70671 -15.60710 -15.04082 -14.32112 -14.05768 -13.57476 -13.43061 -13.17271 -12.88453 -12.63711 -12.56686 -12.28305 -12.06484 -11.51645 -11.39247 -11.34408 -11.18710 -10.73631 -10.32390 -8.88794 -7.77260 -5.20313 1.43610 1.45711 1.51907 2.47638 3.08387 3.29251 3.55711 3.83709 4.08475 4.09400 4.25533 4.35798 4.46251 4.59400 4.74213 4.84581 4.93115 4.96372 5.02453 5.07474 5.20072 5.29356 5.48004 5.60343 5.69680 5.84775 6.13344 6.32909 7.12090 7.81506 8.44451 9.24481 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.016686 C = 0.012512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.334271 B = 1677.632904 C = 2237.333437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.293 1.293 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.148 3.852 11 C -0.135 4.135 12 C -0.105 4.105 13 C 0.141 3.859 14 C -0.156 4.156 15 C 0.051 3.949 16 O -0.407 6.407 17 C 0.048 3.952 18 H 0.245 0.755 19 H -0.010 1.010 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -9.519 0.761 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.023 3.977 11 C -0.173 4.173 12 C -0.143 4.143 13 C 0.051 3.949 14 C -0.195 4.195 15 C -0.025 4.025 16 O -0.327 6.327 17 C -0.031 4.031 18 H 0.055 0.945 19 H 0.008 0.992 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.760 -9.287 0.639 9.710 hybrid contribution 0.099 1.471 0.200 1.488 sum 2.859 -7.817 0.840 8.365 Atomic orbital electron populations 1.70046 1.05956 1.24854 1.58836 1.25539 0.96536 1.00643 1.03206 0.85287 0.77275 0.79600 0.78069 1.21879 1.20490 1.20793 1.19384 0.90903 0.83481 1.41621 0.90182 1.44575 1.02376 0.99987 1.85125 1.21912 0.83996 0.95273 0.96536 1.22974 0.98577 0.95861 0.99889 1.22413 0.93445 0.96194 1.02222 1.21353 0.93951 0.86781 0.92782 1.23501 0.95533 1.01579 0.98935 1.23466 0.98581 0.98940 0.81550 1.88305 1.28039 1.90702 1.25682 1.23645 0.81959 1.00295 0.97172 0.94488 0.99235 0.91242 0.91971 0.89721 0.88570 0.90094 0.91803 0.88370 0.88244 0.94171 0.89223 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.48 10.11 21.65 0.22 -56.26 16 2 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 3 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 4 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.22 -12.46 9.23 84.03 0.78 -11.68 16 8 H 0.08 4.38 5.44 -2.91 -0.02 4.37 16 9 N -0.60 -29.86 2.92 -645.25 -1.89 -31.74 16 10 C 0.15 7.16 5.94 86.92 0.52 7.67 16 11 C -0.13 -4.78 7.11 32.20 0.23 -4.55 16 12 C -0.10 -3.28 6.03 31.53 0.19 -3.09 16 13 C 0.14 5.54 0.91 4.38 0.00 5.55 16 14 C -0.16 -5.50 5.99 31.76 0.19 -5.31 16 15 C 0.05 1.85 7.16 72.71 0.52 2.37 16 16 O -0.41 -16.32 11.38 -148.98 -1.69 -18.01 16 17 C 0.05 1.83 6.86 72.10 0.49 2.33 16 18 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 19 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 20 H 0.07 3.88 5.89 -2.39 -0.01 3.87 16 21 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 23 H 0.10 2.41 7.34 -2.39 -0.02 2.39 16 24 H 0.08 2.30 7.90 -2.39 -0.02 2.28 16 25 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.10 2.76 8.02 -2.39 -0.02 2.74 16 27 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.04 1.68 5.98 -2.39 -0.01 1.67 16 29 H 0.09 2.81 7.33 -2.38 -0.02 2.79 16 30 H 0.04 1.77 7.99 -2.39 -0.02 1.76 16 Total: -1.00 -63.92 234.91 3.17 -60.75 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.12 Total: 6.82 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 3.39 Total: -10.06 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -1.67 Total: -88.00 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.69 Total: -18.01 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -63.92 3.17 -60.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.994 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds