Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48500 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46572 * 299.99718 * 3 2 1 6 6 H 1.48498 * 109.47018 * 59.99424 * 3 2 1 7 7 C 1.37879 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99639 * 169.40867 * 7 2 1 9 9 C 1.50694 * 120.00405 * 349.40457 * 7 2 1 10 10 C 1.52997 * 115.55149 * 324.84690 * 9 7 2 11 11 N 1.46898 * 109.47283 * 306.39484 * 10 9 7 12 12 C 1.48216 * 111.00559 * 171.93680 * 11 10 9 13 13 C 1.54302 * 105.06286 * 144.54864 * 12 11 10 14 14 C 1.54498 * 104.52443 * 359.14867 * 13 12 11 15 15 O 1.44813 * 103.85791 * 336.77900 * 14 13 12 16 16 C 1.53002 * 117.49881 * 110.51473 * 9 7 2 17 17 C 1.52996 * 117.50108 * 179.17545 * 9 7 2 18 18 H 0.96990 * 119.99839 * 5.01630 * 1 2 3 19 19 H 1.08996 * 109.47766 * 186.39203 * 10 9 7 20 20 H 1.09007 * 109.47562 * 66.39309 * 10 9 7 21 21 H 1.08999 * 110.31782 * 25.65304 * 12 11 10 22 22 H 1.09000 * 110.40723 * 263.49357 * 12 11 10 23 23 H 1.08995 * 110.44491 * 117.95011 * 13 12 11 24 24 H 1.09006 * 110.44668 * 240.35406 * 13 12 11 25 25 H 1.09004 * 110.52918 * 95.30809 * 14 13 12 26 26 H 1.08999 * 110.53238 * 218.07154 * 14 13 12 27 27 H 1.09000 * 117.49893 * 215.00404 * 16 9 7 28 28 H 1.08998 * 117.49566 * 0.02562 * 16 9 7 29 29 H 1.09006 * 117.49954 * 359.97438 * 17 9 7 30 30 H 1.09000 * 117.50256 * 144.97969 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0708 -1.2021 -0.1714 9 6 1.2704 -2.4879 0.2411 10 6 0.1064 -2.4120 1.2311 11 7 0.5750 -1.8256 2.4938 12 6 -0.5600 -1.5577 3.4086 13 6 -0.0112 -1.8421 4.8224 14 6 1.4491 -2.2889 4.5886 15 8 1.4510 -2.7667 3.2216 16 6 1.1322 -3.4517 -0.9392 17 6 2.0882 -3.7806 0.2102 18 1 -0.4849 0.8368 -0.0734 19 1 -0.2787 -3.4146 1.4169 20 1 -0.6858 -1.7902 0.8137 21 1 -1.3925 -2.2246 3.1844 22 1 -0.8763 -0.5178 3.3273 23 1 -0.0402 -0.9383 5.4310 24 1 -0.5817 -2.6394 5.2990 25 1 2.1295 -1.4444 4.6988 26 1 1.7185 -3.0904 5.2765 27 1 0.2120 -4.0317 -1.0103 28 1 1.5727 -3.1501 -1.8894 29 1 3.1574 -3.6952 0.0154 30 1 1.7973 -4.5768 0.8954 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306491770.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = 36.389580 kcal Electronic energy + Delta-G solvation = -13176.563388 eV Core-core repulsion = 10974.958868 eV Total energy + Delta-G solvation = -2201.604520 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.99235 -36.21108 -32.05323 -31.65586 -30.68407 -25.80555 -24.98979 -22.26280 -21.12506 -20.69592 -18.88043 -16.33960 -15.43715 -15.08727 -14.77878 -14.32611 -13.50956 -13.26740 -12.84246 -12.26038 -11.85016 -11.42042 -11.30616 -11.13474 -10.86963 -10.72363 -10.43656 -10.32834 -9.98004 -9.57815 -9.20276 -8.95142 -8.54609 -7.93963 -7.54934 -5.88734 -3.86917 3.37238 3.45181 3.50997 3.91815 4.52093 4.97710 5.20495 5.23945 5.27667 5.62313 5.74818 5.91348 6.08034 6.11779 6.23446 6.30993 6.41233 6.46211 6.68930 6.81590 6.87248 7.00422 7.16159 7.42609 7.49582 7.75009 7.88753 8.07830 8.60693 9.06102 9.71442 11.15721 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.016664 C = 0.012755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.498119 B = 1679.903233 C = 2194.720256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.464 4.464 8 H 0.056 0.944 9 C 0.067 3.933 10 C 0.077 3.923 11 N -0.276 5.276 12 C -0.001 4.001 13 C -0.152 4.152 14 C 0.047 3.953 15 O -0.264 6.264 16 C -0.209 4.209 17 C -0.203 4.203 18 H 0.257 0.743 19 H 0.006 0.994 20 H 0.132 0.868 21 H 0.043 0.957 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 -2.321 6.928 7.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.066 3.934 10 C -0.051 4.051 11 N -0.045 5.045 12 C -0.130 4.130 13 C -0.191 4.191 14 C -0.032 4.032 15 O -0.266 6.266 16 C -0.248 4.248 17 C -0.240 4.240 18 H 0.067 0.933 19 H 0.024 0.976 20 H 0.150 0.850 21 H 0.061 0.939 22 H 0.111 0.889 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.356 -1.923 6.775 7.172 hybrid contribution -0.227 0.173 0.269 0.393 sum -1.583 -1.750 7.044 7.429 Atomic orbital electron populations 1.69751 1.06055 1.26150 1.50815 1.24773 0.94628 0.98628 0.93966 0.86532 0.80320 0.83772 0.77211 1.19904 1.21544 1.20959 1.20406 0.93617 0.89069 1.47020 0.92560 1.18766 0.93641 0.88961 0.92055 1.22327 0.99369 0.95701 0.87688 1.71563 1.10974 1.23328 0.98597 1.23592 0.94648 1.02359 0.92383 1.23088 0.97069 1.01476 0.97444 1.23212 0.95213 0.98975 0.85752 1.91928 1.65676 1.49992 1.19015 1.23011 0.99407 1.07659 0.94690 1.22817 0.96551 1.02529 1.02142 0.93290 0.97612 0.85043 0.93864 0.88887 0.90748 0.91604 0.92209 0.90336 0.92078 0.90407 0.90925 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 10.76 55.43 0.60 -23.85 16 2 C 0.08 2.24 5.14 -17.82 -0.09 2.15 16 3 Si 0.89 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.46 -13.10 8.72 -34.44 -0.30 -13.40 16 8 H 0.06 1.62 7.84 -52.48 -0.41 1.21 16 9 C 0.07 1.73 1.92 -155.67 -0.30 1.44 16 10 C 0.08 1.90 4.08 -3.83 -0.02 1.88 16 11 N -0.28 -6.45 5.32 -112.03 -0.60 -7.05 16 12 C 0.00 -0.01 6.97 -2.42 -0.02 -0.03 16 13 C -0.15 -2.33 7.05 -25.26 -0.18 -2.51 16 14 C 0.05 0.81 7.93 37.94 0.30 1.11 16 15 O -0.26 -5.95 11.93 -14.75 -0.18 -6.13 16 16 C -0.21 -4.98 9.96 -26.69 -0.27 -5.25 16 17 C -0.20 -4.83 9.92 -26.70 -0.26 -5.10 16 18 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 19 H 0.01 0.14 8.08 -51.93 -0.42 -0.28 16 20 H 0.13 3.43 6.01 -51.92 -0.31 3.12 16 21 H 0.04 0.78 7.79 -51.93 -0.40 0.37 16 22 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 29 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 30 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -29.35 251.89 -7.02 -36.38 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.49 Total: -0.08 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.13 Total: -19.71 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.00 Total: -30.90 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.18 Total: -6.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.35 -7.02 -36.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306491770.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.765 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds