Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48500 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46572 * 299.99718 * 3 2 1 6 6 H 1.48498 * 109.47018 * 59.99424 * 3 2 1 7 7 C 1.37879 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99639 * 169.40867 * 7 2 1 9 9 C 1.50694 * 120.00405 * 349.40457 * 7 2 1 10 10 C 1.52997 * 115.55149 * 324.84690 * 9 7 2 11 11 N 1.46898 * 109.47283 * 306.39484 * 10 9 7 12 12 C 1.48216 * 111.00559 * 171.93680 * 11 10 9 13 13 C 1.54302 * 105.06286 * 144.54864 * 12 11 10 14 14 C 1.54498 * 104.52443 * 359.14867 * 13 12 11 15 15 O 1.44813 * 103.85791 * 336.77900 * 14 13 12 16 16 C 1.53002 * 117.49881 * 110.51473 * 9 7 2 17 17 C 1.52996 * 117.50108 * 179.17545 * 9 7 2 18 18 H 0.96990 * 119.99839 * 5.01630 * 1 2 3 19 19 H 1.08996 * 109.47766 * 186.39203 * 10 9 7 20 20 H 1.09007 * 109.47562 * 66.39309 * 10 9 7 21 21 H 1.08999 * 110.31782 * 25.65304 * 12 11 10 22 22 H 1.09000 * 110.40723 * 263.49357 * 12 11 10 23 23 H 1.08995 * 110.44491 * 117.95011 * 13 12 11 24 24 H 1.09006 * 110.44668 * 240.35406 * 13 12 11 25 25 H 1.09004 * 110.52918 * 95.30809 * 14 13 12 26 26 H 1.08999 * 110.53238 * 218.07154 * 14 13 12 27 27 H 1.09000 * 117.49893 * 215.00404 * 16 9 7 28 28 H 1.08998 * 117.49566 * 0.02562 * 16 9 7 29 29 H 1.09006 * 117.49954 * 359.97438 * 17 9 7 30 30 H 1.09000 * 117.50256 * 144.97969 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0708 -1.2021 -0.1714 9 6 1.2704 -2.4879 0.2411 10 6 0.1064 -2.4120 1.2311 11 7 0.5750 -1.8256 2.4938 12 6 -0.5600 -1.5577 3.4086 13 6 -0.0112 -1.8421 4.8224 14 6 1.4491 -2.2889 4.5886 15 8 1.4510 -2.7667 3.2216 16 6 1.1322 -3.4517 -0.9392 17 6 2.0882 -3.7806 0.2102 18 1 -0.4849 0.8368 -0.0734 19 1 -0.2787 -3.4146 1.4169 20 1 -0.6858 -1.7902 0.8137 21 1 -1.3925 -2.2246 3.1844 22 1 -0.8763 -0.5178 3.3273 23 1 -0.0402 -0.9383 5.4310 24 1 -0.5817 -2.6394 5.2990 25 1 2.1295 -1.4444 4.6988 26 1 1.7185 -3.0904 5.2765 27 1 0.2120 -4.0317 -1.0103 28 1 1.5727 -3.1501 -1.8894 29 1 3.1574 -3.6952 0.0154 30 1 1.7973 -4.5768 0.8954 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306491770.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = 18.221664 kcal Electronic energy + Delta-G solvation = -13177.351208 eV Core-core repulsion = 10974.958868 eV Total energy + Delta-G solvation = -2202.392340 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.60241 -38.05086 -34.07796 -33.35008 -32.16629 -27.71383 -26.83243 -23.85118 -22.94248 -22.20037 -20.85776 -18.25446 -16.94004 -16.76447 -16.61322 -16.07563 -15.37499 -14.97115 -14.49533 -13.94423 -13.48832 -13.13062 -13.05784 -12.80591 -12.64743 -12.46392 -12.25524 -12.10967 -11.80994 -11.16704 -11.03837 -10.95094 -10.51273 -9.93426 -9.24152 -7.95556 -6.00558 1.43914 1.48032 1.57791 2.32576 2.50989 3.13863 3.56209 3.78783 3.86823 4.01912 4.27675 4.36735 4.50702 4.59176 4.72572 4.80028 4.81880 4.90648 4.96905 5.07163 5.10263 5.17454 5.30592 5.52334 5.59693 5.94848 6.06210 6.17505 6.54056 6.94680 7.59248 9.06993 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.016664 C = 0.012755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.498119 B = 1679.903233 C = 2194.720256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.048 3.952 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.490 4.490 8 H 0.038 0.962 9 C 0.036 3.964 10 C 0.090 3.910 11 N -0.305 5.305 12 C -0.007 4.007 13 C -0.138 4.138 14 C 0.037 3.963 15 O -0.290 6.290 16 C -0.202 4.202 17 C -0.190 4.190 18 H 0.259 0.741 19 H 0.008 0.992 20 H 0.113 0.887 21 H 0.048 0.952 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -2.295 8.145 8.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.152 4.152 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.039 4.039 11 N -0.073 5.073 12 C -0.136 4.136 13 C -0.177 4.177 14 C -0.041 4.041 15 O -0.293 6.293 16 C -0.240 4.240 17 C -0.227 4.227 18 H 0.069 0.931 19 H 0.026 0.974 20 H 0.130 0.870 21 H 0.067 0.933 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.130 0.870 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.598 -1.897 7.994 8.370 hybrid contribution -0.138 0.148 -0.064 0.212 sum -1.735 -1.749 7.930 8.304 Atomic orbital electron populations 1.69849 1.06668 1.26772 1.50574 1.25302 0.95401 1.00872 0.93610 0.85726 0.78967 0.80655 0.77434 1.20317 1.20733 1.20542 1.20523 0.93002 0.90814 1.48354 0.94379 1.18946 0.94940 0.88948 0.93665 1.22023 0.98154 0.95337 0.88344 1.71369 1.12883 1.23730 0.99280 1.23681 0.93845 1.02182 0.93895 1.23060 0.95641 1.03482 0.95504 1.23551 0.96493 1.00143 0.83936 1.91876 1.65723 1.50166 1.21557 1.23004 1.00054 1.06887 0.94101 1.22757 0.96274 1.01654 1.02060 0.93088 0.97369 0.87000 0.93332 0.89336 0.88401 0.89028 0.92660 0.87019 0.90412 0.90835 0.91209 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.45 10.76 21.45 0.23 -49.22 16 2 C 0.05 2.66 5.14 84.65 0.43 3.10 16 3 Si 0.95 44.36 29.55 68.60 2.03 46.38 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.49 -27.93 8.72 25.60 0.22 -27.71 16 8 H 0.04 2.24 7.84 -2.91 -0.02 2.21 16 9 C 0.04 1.86 1.92 -52.93 -0.10 1.76 16 10 C 0.09 4.42 4.08 86.30 0.35 4.77 16 11 N -0.30 -14.05 5.32 -508.35 -2.70 -16.76 16 12 C -0.01 -0.26 6.97 86.49 0.60 0.34 16 13 C -0.14 -3.81 7.05 31.54 0.22 -3.59 16 14 C 0.04 1.17 7.93 72.49 0.57 1.75 16 15 O -0.29 -12.74 11.93 -54.02 -0.64 -13.38 16 16 C -0.20 -9.53 9.96 30.62 0.30 -9.22 16 17 C -0.19 -8.95 9.92 30.62 0.30 -8.65 16 18 H 0.26 13.56 8.32 -92.72 -0.77 12.79 16 19 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 20 H 0.11 5.89 6.01 -2.38 -0.01 5.87 16 21 H 0.05 1.69 7.79 -2.39 -0.02 1.67 16 22 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 23 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 27 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.07 3.27 8.14 -2.38 -0.02 3.25 16 30 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -61.70 251.89 2.93 -58.77 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.10 Total: 11.67 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 2.92 Total: -37.45 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -2.47 Total: -65.98 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.64 Total: -13.38 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.70 2.93 -58.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306491770.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.992 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds