Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30274 * 126.27763 * 2 1 4 4 N 1.28674 * 109.37802 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37972 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28314 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47255 * 165.04366 * 6 5 4 8 8 C 1.53000 * 109.46851 * 285.04094 * 6 5 4 9 9 N 1.46495 * 109.47151 * 45.03691 * 6 5 4 10 10 C 1.36935 * 119.99966 * 154.99996 * 9 6 5 11 11 H 1.08000 * 120.00151 * 0.02562 * 10 9 6 12 12 C 1.38812 * 120.00016 * 180.02562 * 10 9 6 13 13 N 1.31622 * 120.00165 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00069 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.46778 * 89.99926 * 14 12 10 16 16 H 1.48504 * 109.47155 * 209.99965 * 14 12 10 17 17 H 1.48492 * 109.46915 * 329.99931 * 14 12 10 18 18 O 1.34356 * 126.28319 * 180.02562 * 2 1 3 19 19 H 1.08995 * 109.47003 * 269.95828 * 1 2 3 20 20 H 1.08997 * 109.46726 * 29.96361 * 1 2 3 21 21 H 1.09004 * 109.46588 * 149.95599 * 1 2 3 22 22 H 1.08997 * 109.47430 * 59.99870 * 8 6 5 23 23 H 1.08999 * 109.47224 * 179.97438 * 8 6 5 24 24 H 1.09004 * 109.46832 * 299.99574 * 8 6 5 25 25 H 0.97001 * 120.00028 * 335.00580 * 9 6 5 26 26 H 0.97001 * 119.99886 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 1 4.5676 -2.4908 0.2642 8 6 5.4484 -1.4366 -1.3951 9 7 5.7674 -0.9242 0.9749 10 6 6.7152 -1.7409 1.5316 11 1 6.7629 -2.7826 1.2506 12 6 7.6148 -1.2298 2.4570 13 7 8.5262 -2.0146 2.9917 14 14 7.5319 0.5719 2.9436 15 1 6.6254 0.7285 4.1093 16 1 8.8905 1.0500 3.3053 17 1 7.0138 1.3693 1.8031 18 8 2.3022 -1.0830 -0.0005 19 1 -0.3633 -0.0007 1.0276 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5146 22 1 5.6986 -0.4096 -1.6608 23 1 6.3544 -2.0427 -1.3958 24 1 4.7418 -1.8381 -2.1215 25 1 5.7248 0.0114 1.2271 26 1 9.1550 -1.6573 3.6382 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306516677.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = 49.214210 kcal Electronic energy + Delta-G solvation = -12293.019682 eV Core-core repulsion = 9988.430937 eV Total energy + Delta-G solvation = -2304.588745 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.91400 -36.15876 -35.83275 -32.85060 -31.77547 -29.40828 -27.71702 -24.53224 -23.20760 -22.21928 -20.53847 -18.19851 -17.15112 -16.59048 -15.20202 -14.75995 -14.36818 -13.53695 -13.46201 -12.95678 -12.79087 -12.57689 -12.11526 -11.92567 -11.61459 -11.21752 -11.11384 -10.92904 -10.55655 -10.14914 -9.70327 -9.26736 -9.06063 -7.49251 -5.88805 -3.28211 1.42498 2.48765 2.68122 3.37745 3.44313 3.47413 4.06384 4.52863 4.64836 4.91762 5.15018 5.29012 5.39801 5.41226 5.55772 5.64821 5.84514 5.87642 5.96792 6.22974 6.41714 6.75914 7.81183 8.28070 8.60606 9.04090 9.76123 9.93224 11.27661 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.049663 B = 0.010002 C = 0.009153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.666375 B = 2798.729908 C = 3058.470163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.138 3.862 3 N -0.291 5.291 4 N -0.291 5.291 5 C 0.180 3.820 6 C 0.271 3.729 7 H 0.087 0.913 8 C -0.159 4.159 9 N -0.733 5.733 10 C -0.258 4.258 11 H 0.097 0.903 12 C 0.017 3.983 13 N -0.924 5.924 14 Si 0.877 3.123 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.269 1.269 18 O -0.227 6.227 19 H 0.094 0.906 20 H 0.102 0.898 21 H 0.089 0.911 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.373 0.627 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.194 1.669 -7.019 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 N -0.139 5.139 4 N -0.137 5.137 5 C -0.032 4.032 6 C 0.158 3.842 7 H 0.105 0.895 8 C -0.219 4.219 9 N -0.378 5.378 10 C -0.387 4.387 11 H 0.114 0.886 12 C -0.180 4.180 13 N -0.570 5.570 14 Si 0.706 3.294 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.195 1.195 18 O -0.106 6.106 19 H 0.113 0.887 20 H 0.120 0.880 21 H 0.108 0.892 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.065 0.935 25 H 0.207 0.793 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.651 2.703 -6.923 15.543 hybrid contribution -0.352 0.119 0.513 0.634 sum -14.004 2.822 -6.410 15.657 Atomic orbital electron populations 1.20244 0.80677 1.05190 1.04874 1.27916 0.97739 0.80245 1.01453 1.74341 0.96435 1.25936 1.17197 1.74341 1.11473 1.09733 1.18112 1.29277 0.85234 0.92054 0.96618 1.18727 0.79520 0.93672 0.92253 0.89487 1.22404 1.01402 1.02996 0.95146 1.42759 1.35342 1.10010 1.49732 1.18990 1.06463 0.94122 1.19075 0.88552 1.24618 0.97472 0.97537 0.98364 1.69692 1.20465 1.34706 1.32157 0.86643 0.77296 0.86381 0.79048 1.20894 1.21286 1.19465 1.84794 1.17767 1.38291 1.69724 0.88708 0.87978 0.89206 0.92191 0.90081 0.93537 0.79254 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.44 10.51 36.01 0.38 -0.06 15 2 C 0.14 2.08 8.48 -12.94 -0.11 1.97 15 3 N -0.29 -5.41 12.22 32.55 0.40 -5.01 15 4 N -0.29 -6.04 11.93 32.55 0.39 -5.65 15 5 C 0.18 3.49 7.27 -12.94 -0.09 3.40 15 6 C 0.27 5.35 3.43 -69.08 -0.24 5.11 15 7 H 0.09 1.63 8.08 -51.93 -0.42 1.21 15 8 C -0.16 -2.74 9.47 37.16 0.35 -2.39 15 9 N -0.73 -17.74 4.92 -54.56 -0.27 -18.01 15 10 C -0.26 -7.10 10.41 -15.06 -0.16 -7.26 15 11 H 0.10 2.75 8.06 -52.49 -0.42 2.33 15 12 C 0.02 0.51 5.50 -17.43 -0.10 0.41 15 13 N -0.92 -28.42 13.97 55.49 0.78 -27.65 15 14 Si 0.88 22.45 27.74 -169.99 -4.71 17.74 15 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 15 16 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 17 H -0.27 -6.73 6.52 56.52 0.37 -6.36 15 18 O -0.23 -3.85 10.87 5.40 0.06 -3.79 15 19 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.10 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.09 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 25 H 0.37 9.34 5.42 -40.82 -0.22 9.12 15 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 LS Contribution 236.17 15.07 3.56 3.56 Total: -1.00 -32.65 236.17 -2.54 -35.19 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -2.77 Total: 2.45 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 0.04 Total: 1.18 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 1.29 Total: -56.32 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: 0.06 Total: -3.79 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.65 -2.54 -35.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306516677.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.401 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds