Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30274 * 126.27763 * 2 1 4 4 N 1.28674 * 109.37802 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37972 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28314 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47255 * 165.04366 * 6 5 4 8 8 C 1.53000 * 109.46851 * 285.04094 * 6 5 4 9 9 N 1.46495 * 109.47151 * 45.03691 * 6 5 4 10 10 C 1.36935 * 119.99966 * 154.99996 * 9 6 5 11 11 H 1.08000 * 120.00151 * 0.02562 * 10 9 6 12 12 C 1.38812 * 120.00016 * 180.02562 * 10 9 6 13 13 N 1.31622 * 120.00165 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00069 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.46778 * 89.99926 * 14 12 10 16 16 H 1.48504 * 109.47155 * 209.99965 * 14 12 10 17 17 H 1.48492 * 109.46915 * 329.99931 * 14 12 10 18 18 O 1.34356 * 126.28319 * 180.02562 * 2 1 3 19 19 H 1.08995 * 109.47003 * 269.95828 * 1 2 3 20 20 H 1.08997 * 109.46726 * 29.96361 * 1 2 3 21 21 H 1.09004 * 109.46588 * 149.95599 * 1 2 3 22 22 H 1.08997 * 109.47430 * 59.99870 * 8 6 5 23 23 H 1.08999 * 109.47224 * 179.97438 * 8 6 5 24 24 H 1.09004 * 109.46832 * 299.99574 * 8 6 5 25 25 H 0.97001 * 120.00028 * 335.00580 * 9 6 5 26 26 H 0.97001 * 119.99886 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 1 4.5676 -2.4908 0.2642 8 6 5.4484 -1.4366 -1.3951 9 7 5.7674 -0.9242 0.9749 10 6 6.7152 -1.7409 1.5316 11 1 6.7629 -2.7826 1.2506 12 6 7.6148 -1.2298 2.4570 13 7 8.5262 -2.0146 2.9917 14 14 7.5319 0.5719 2.9436 15 1 6.6254 0.7285 4.1093 16 1 8.8905 1.0500 3.3053 17 1 7.0138 1.3693 1.8031 18 8 2.3022 -1.0830 -0.0005 19 1 -0.3633 -0.0007 1.0276 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5146 22 1 5.6986 -0.4096 -1.6608 23 1 6.3544 -2.0427 -1.3958 24 1 4.7418 -1.8381 -2.1215 25 1 5.7248 0.0114 1.2271 26 1 9.1550 -1.6573 3.6382 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306516677.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = 21.477791 kcal Electronic energy + Delta-G solvation = -12294.222423 eV Core-core repulsion = 9988.430937 eV Total energy + Delta-G solvation = -2305.791487 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.27146 -37.87728 -37.21794 -34.54491 -33.27958 -31.15972 -28.88721 -26.17932 -24.96079 -23.48268 -22.14083 -20.18387 -18.50762 -18.01590 -16.95929 -16.49845 -15.70961 -15.18082 -14.63632 -14.54422 -14.07426 -13.68438 -13.60619 -13.42886 -13.06242 -12.95928 -12.76546 -12.62201 -12.19204 -11.88000 -11.85929 -11.18885 -10.53986 -9.54328 -8.09773 -5.46699 0.11514 1.19299 1.30617 1.34895 1.37562 1.44636 2.41803 2.84446 3.21611 3.33387 3.56987 3.92463 4.16467 4.33673 4.37948 4.52123 4.58358 4.74517 4.83684 4.95525 5.06749 5.33434 5.66733 6.12476 6.92855 7.24342 7.66137 7.84368 9.09869 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.049663 B = 0.010002 C = 0.009153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.666375 B = 2798.729908 C = 3058.470163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.163 3.837 3 N -0.331 5.331 4 N -0.318 5.318 5 C 0.169 3.831 6 C 0.267 3.733 7 H 0.097 0.903 8 C -0.148 4.148 9 N -0.743 5.743 10 C -0.236 4.236 11 H 0.080 0.920 12 C -0.043 4.043 13 N -0.970 5.970 14 Si 0.935 3.065 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.262 1.262 18 O -0.226 6.226 19 H 0.117 0.883 20 H 0.122 0.878 21 H 0.118 0.882 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.368 0.632 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.536 2.095 -7.853 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.048 4.048 3 N -0.177 5.177 4 N -0.164 5.164 5 C -0.044 4.044 6 C 0.156 3.844 7 H 0.114 0.886 8 C -0.208 4.208 9 N -0.388 5.388 10 C -0.366 4.366 11 H 0.098 0.902 12 C -0.236 4.236 13 N -0.619 5.619 14 Si 0.763 3.237 15 H -0.210 1.210 16 H -0.213 1.213 17 H -0.187 1.187 18 O -0.106 6.106 19 H 0.135 0.865 20 H 0.140 0.860 21 H 0.136 0.864 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.202 0.798 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.045 3.149 -7.799 18.116 hybrid contribution 0.160 -0.070 0.684 0.705 sum -15.885 3.079 -7.116 17.676 Atomic orbital electron populations 1.20740 0.75829 1.07559 1.06916 1.29267 0.99655 0.78811 0.97059 1.74293 0.96093 1.27333 1.19995 1.74267 1.13076 1.10456 1.18563 1.28795 0.85895 0.91672 0.98067 1.18882 0.79252 0.93906 0.92334 0.88564 1.22260 1.01745 1.02591 0.94250 1.42759 1.36029 1.09460 1.50555 1.19003 1.06320 0.93643 1.17609 0.90215 1.25250 0.97864 1.01097 0.99383 1.69816 1.21893 1.36446 1.33715 0.85709 0.77036 0.82266 0.78673 1.20978 1.21271 1.18724 1.84803 1.17082 1.38822 1.69853 0.86506 0.86011 0.86364 0.93042 0.90715 0.90198 0.79808 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.65 10.51 71.24 0.75 0.09 15 2 C 0.16 4.44 8.48 88.34 0.75 5.19 15 3 N -0.33 -11.70 12.22 -165.50 -2.02 -13.72 15 4 N -0.32 -12.85 11.93 -165.50 -1.97 -14.83 15 5 C 0.17 6.29 7.27 88.34 0.64 6.93 15 6 C 0.27 10.23 3.43 44.25 0.15 10.38 15 7 H 0.10 3.49 8.08 -2.39 -0.02 3.47 15 8 C -0.15 -4.89 9.47 71.98 0.68 -4.20 15 9 N -0.74 -35.56 4.92 -326.52 -1.61 -37.17 15 10 C -0.24 -13.05 10.41 84.03 0.87 -12.18 15 11 H 0.08 4.61 8.06 -2.91 -0.02 4.59 15 12 C -0.04 -2.50 5.50 84.86 0.47 -2.03 15 13 N -0.97 -60.69 13.97 21.65 0.30 -60.39 15 14 Si 0.94 46.80 27.74 68.60 1.90 48.71 15 15 H -0.28 -14.08 7.11 99.48 0.71 -13.37 15 16 H -0.29 -14.19 7.11 99.48 0.71 -13.49 15 17 H -0.26 -12.65 6.52 99.48 0.65 -12.00 15 18 O -0.23 -7.12 10.87 -3.59 -0.04 -7.16 15 19 H 0.12 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.12 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.12 0.87 8.14 -2.38 -0.02 0.85 15 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 24 H 0.08 2.09 8.14 -2.38 -0.02 2.07 15 25 H 0.37 18.21 5.42 -92.71 -0.50 17.71 15 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 15 Total: -1.00 -70.77 236.17 1.51 -69.26 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.63 Total: 11.11 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.32 Total: 4.18 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -5.30 Total: -126.11 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.04 Total: -7.16 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.90 Total: 48.71 kcal Total: -70.77 1.51 -69.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306516677.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.741 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds