Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53781 * 113.61307 * 2 1 4 4 C 1.53780 * 87.08101 * 139.97963 * 3 2 1 5 5 C 1.50704 * 113.61375 * 220.01929 * 4 3 2 6 6 O 1.21292 * 120.00082 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99632 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00529 * 0.02562 * 7 5 4 9 9 C 1.37097 * 119.99474 * 179.97438 * 7 5 4 10 10 H 1.07998 * 120.00317 * 24.62195 * 9 7 5 11 11 C 1.38955 * 119.99803 * 204.61892 * 9 7 5 12 12 N 1.31414 * 120.00132 * 12.31133 * 11 9 7 13 13 Si 1.86803 * 119.99974 * 192.30504 * 11 9 7 14 14 H 1.48494 * 109.47012 * 90.00118 * 13 11 9 15 15 H 1.48504 * 109.46935 * 210.00618 * 13 11 9 16 16 H 1.48504 * 109.47299 * 330.00184 * 13 11 9 17 17 C 1.53780 * 87.08437 * 334.56843 * 4 3 2 18 18 H 1.09002 * 109.47099 * 60.00313 * 1 2 3 19 19 H 1.09001 * 109.46711 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47449 * 299.99589 * 1 2 3 21 21 H 1.09000 * 112.85326 * 228.80229 * 2 1 3 22 22 H 1.09000 * 113.61582 * 25.43277 * 3 2 1 23 23 H 1.08999 * 113.61880 * 254.52484 * 3 2 1 24 24 H 1.09005 * 113.61629 * 89.11886 * 4 3 2 25 25 H 1.09007 * 109.47222 * 85.60689 * 8 7 5 26 26 H 1.09001 * 109.47671 * 205.60912 * 8 7 5 27 27 H 1.09004 * 109.47011 * 325.61214 * 8 7 5 28 28 H 0.96999 * 120.00016 * 180.02562 * 12 11 9 29 29 H 1.08997 * 113.61417 * 139.97729 * 17 4 3 30 30 H 1.08998 * 113.61330 * 270.88924 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1923 0.8662 0.9876 5 6 3.5406 1.8330 2.0899 6 8 3.0073 2.9215 2.1329 7 7 4.4456 1.4884 3.0274 8 6 5.0910 0.1743 2.9746 9 6 4.7628 2.3681 4.0299 10 1 4.0573 3.1321 4.3213 11 6 5.9922 2.2767 4.6711 12 7 6.9408 1.5188 4.1684 13 14 6.2966 3.2314 6.2477 14 1 5.9063 2.3988 7.4136 15 1 7.7373 3.5774 6.3464 16 1 5.4881 4.4770 6.2360 17 6 2.1460 -0.1839 1.3970 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.9533 -0.6616 -0.7558 22 1 1.4945 2.1704 0.4289 23 1 2.5650 1.7025 -0.9625 24 1 4.0711 0.4410 0.5028 25 1 5.9592 0.2221 2.3172 26 1 5.4091 -0.1149 3.9762 27 1 4.3849 -0.5621 2.5908 28 1 7.7988 1.4547 4.6162 29 1 2.5651 -1.1764 1.5622 30 1 1.4945 0.1420 2.2078 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306546200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -19.348481 kcal Electronic energy + Delta-G solvation = -12802.264801 eV Core-core repulsion = 10598.243298 eV Total energy + Delta-G solvation = -2204.021503 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.45177 -36.98183 -34.50802 -31.55268 -29.66014 -26.33977 -25.18735 -24.91614 -22.87563 -19.37567 -18.28030 -16.79914 -16.09079 -15.11696 -14.62986 -14.11461 -13.93677 -13.18513 -12.89778 -12.59675 -12.03730 -11.79950 -11.46807 -11.33378 -11.18644 -10.86114 -10.77447 -10.42121 -10.28000 -10.18164 -10.01297 -9.78134 -8.94873 -8.22008 -7.57772 -6.26263 -3.82525 3.19660 3.27748 3.33683 3.94803 4.19429 4.84595 4.92458 5.04165 5.15554 5.31030 5.43240 5.64272 5.79416 5.94110 6.03314 6.12407 6.15427 6.24037 6.34294 6.40770 6.49552 6.67976 6.90975 6.95449 7.25899 7.61915 8.22725 8.57135 9.26434 9.51549 10.09335 10.78817 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071189 B = 0.009071 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.222736 B = 3086.162883 C = 3251.744870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.458 3.542 6 O -0.591 6.591 7 N -0.448 5.448 8 C 0.114 3.886 9 C -0.306 4.306 10 H 0.096 0.904 11 C 0.029 3.971 12 N -0.885 5.885 13 Si 0.925 3.075 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C -0.118 4.118 18 H 0.053 0.947 19 H 0.050 0.950 20 H 0.056 0.944 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.266 0.734 29 H 0.066 0.934 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -5.999 -4.982 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C -0.149 4.149 4 C -0.148 4.148 5 C 0.246 3.754 6 O -0.476 6.476 7 N -0.166 5.166 8 C -0.030 4.030 9 C -0.434 4.434 10 H 0.114 0.886 11 C -0.174 4.174 12 N -0.524 5.524 13 Si 0.752 3.248 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.156 4.156 18 H 0.072 0.928 19 H 0.069 0.931 20 H 0.075 0.925 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.967 -5.516 -4.877 9.477 hybrid contribution 0.569 0.262 0.779 0.999 sum -5.398 -5.255 -4.098 8.576 Atomic orbital electron populations 1.21703 0.95185 1.01043 1.01727 1.22502 0.95306 0.98213 0.97709 1.22825 0.97562 0.96203 0.98333 1.22532 0.97794 0.97318 0.97131 1.19950 0.84262 0.87798 0.83361 1.90482 1.56401 1.24124 1.76588 1.43562 1.36023 1.13757 1.23308 1.21448 0.95121 0.83434 1.03004 1.19662 1.00490 1.12723 1.10525 0.88603 1.25338 0.94637 0.97686 0.99725 1.70000 1.04012 1.39785 1.38623 0.85943 0.77465 0.79914 0.81482 1.20432 1.20979 1.19406 1.22912 0.97572 0.98258 0.96849 0.92841 0.93107 0.92532 0.89647 0.88968 0.92037 0.88524 0.93331 0.90921 0.95436 0.92367 0.91542 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.71 37.16 0.36 -1.32 16 2 C -0.12 -1.65 4.36 -89.81 -0.39 -2.04 16 3 C -0.11 -1.89 6.97 -25.92 -0.18 -2.07 16 4 C -0.13 -2.42 2.83 -90.96 -0.26 -2.68 16 5 C 0.46 11.62 7.15 -10.98 -0.08 11.54 16 6 O -0.59 -17.03 15.61 5.55 0.09 -16.94 16 7 N -0.45 -11.92 3.01 -122.19 -0.37 -12.29 16 8 C 0.11 2.63 8.30 59.84 0.50 3.12 16 9 C -0.31 -8.83 9.24 -14.93 -0.14 -8.97 16 10 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 11 C 0.03 0.78 5.05 -17.47 -0.09 0.70 16 12 N -0.88 -24.27 10.83 55.50 0.60 -23.67 16 13 Si 0.92 21.27 29.57 -169.99 -5.03 16.24 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.12 -1.90 6.44 -25.92 -0.17 -2.07 16 18 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.06 0.73 7.94 -51.93 -0.41 0.31 16 21 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 22 H 0.09 1.74 7.39 -51.93 -0.38 1.36 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.10 1.74 7.88 -51.93 -0.41 1.33 16 25 H 0.05 1.15 7.83 -51.92 -0.41 0.74 16 26 H 0.07 1.77 6.79 -51.93 -0.35 1.41 16 27 H 0.03 0.53 5.97 -51.93 -0.31 0.22 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 30 H 0.08 1.41 7.91 -51.93 -0.41 1.00 16 LS Contribution 248.12 15.07 3.74 3.74 Total: -1.00 -31.26 248.12 -5.71 -36.98 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.30 Total: -0.27 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.44 Total: -3.79 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.23 Total: -35.96 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.09 Total: -16.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.26 -5.71 -36.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306546200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.630 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds