Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53781 * 113.61307 * 2 1 4 4 C 1.53780 * 87.08101 * 139.97963 * 3 2 1 5 5 C 1.50704 * 113.61375 * 220.01929 * 4 3 2 6 6 O 1.21292 * 120.00082 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99632 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00529 * 0.02562 * 7 5 4 9 9 C 1.37097 * 119.99474 * 179.97438 * 7 5 4 10 10 H 1.07998 * 120.00317 * 24.62195 * 9 7 5 11 11 C 1.38955 * 119.99803 * 204.61892 * 9 7 5 12 12 N 1.31414 * 120.00132 * 12.31133 * 11 9 7 13 13 Si 1.86803 * 119.99974 * 192.30504 * 11 9 7 14 14 H 1.48494 * 109.47012 * 90.00118 * 13 11 9 15 15 H 1.48504 * 109.46935 * 210.00618 * 13 11 9 16 16 H 1.48504 * 109.47299 * 330.00184 * 13 11 9 17 17 C 1.53780 * 87.08437 * 334.56843 * 4 3 2 18 18 H 1.09002 * 109.47099 * 60.00313 * 1 2 3 19 19 H 1.09001 * 109.46711 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47449 * 299.99589 * 1 2 3 21 21 H 1.09000 * 112.85326 * 228.80229 * 2 1 3 22 22 H 1.09000 * 113.61582 * 25.43277 * 3 2 1 23 23 H 1.08999 * 113.61880 * 254.52484 * 3 2 1 24 24 H 1.09005 * 113.61629 * 89.11886 * 4 3 2 25 25 H 1.09007 * 109.47222 * 85.60689 * 8 7 5 26 26 H 1.09001 * 109.47671 * 205.60912 * 8 7 5 27 27 H 1.09004 * 109.47011 * 325.61214 * 8 7 5 28 28 H 0.96999 * 120.00016 * 180.02562 * 12 11 9 29 29 H 1.08997 * 113.61417 * 139.97729 * 17 4 3 30 30 H 1.08998 * 113.61330 * 270.88924 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1923 0.8662 0.9876 5 6 3.5406 1.8330 2.0899 6 8 3.0073 2.9215 2.1329 7 7 4.4456 1.4884 3.0274 8 6 5.0910 0.1743 2.9746 9 6 4.7628 2.3681 4.0299 10 1 4.0573 3.1321 4.3213 11 6 5.9922 2.2767 4.6711 12 7 6.9408 1.5188 4.1684 13 14 6.2966 3.2314 6.2477 14 1 5.9063 2.3988 7.4136 15 1 7.7373 3.5774 6.3464 16 1 5.4881 4.4770 6.2360 17 6 2.1460 -0.1839 1.3970 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.9533 -0.6616 -0.7558 22 1 1.4945 2.1704 0.4289 23 1 2.5650 1.7025 -0.9625 24 1 4.0711 0.4410 0.5028 25 1 5.9592 0.2221 2.3172 26 1 5.4091 -0.1149 3.9762 27 1 4.3849 -0.5621 2.5908 28 1 7.7988 1.4547 4.6162 29 1 2.5651 -1.1764 1.5622 30 1 1.4945 0.1420 2.2078 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306546200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -39.094219 kcal Electronic energy + Delta-G solvation = -12803.121041 eV Core-core repulsion = 10598.243298 eV Total energy + Delta-G solvation = -2204.877743 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.09080 -38.66334 -36.58306 -33.64035 -30.89197 -28.28514 -26.78518 -26.50370 -24.51263 -20.80439 -19.92423 -18.88988 -17.89325 -16.80762 -16.30001 -15.95704 -15.73990 -14.72748 -14.25307 -14.00349 -13.55512 -13.42355 -13.30114 -13.07937 -12.87740 -12.63436 -12.44710 -12.17356 -11.97973 -11.64551 -11.31746 -11.02835 -11.00179 -10.20405 -9.66321 -8.35237 -6.00995 1.35932 1.38531 1.51360 2.02807 2.27446 3.05530 3.12820 3.66187 3.75737 3.91149 3.98340 4.38186 4.56348 4.60581 4.75234 4.87082 4.92170 4.95666 5.00205 5.03067 5.15568 5.27757 5.34896 5.42293 5.46239 5.68868 6.10752 6.49778 7.16688 7.48840 8.06188 8.67979 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071189 B = 0.009071 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.222736 B = 3086.162883 C = 3251.744870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.131 4.131 5 C 0.445 3.555 6 O -0.639 6.639 7 N -0.465 5.465 8 C 0.125 3.875 9 C -0.349 4.349 10 H 0.067 0.933 11 C -0.004 4.004 12 N -0.898 5.898 13 Si 0.990 3.010 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.277 1.277 17 C -0.114 4.114 18 H 0.065 0.935 19 H 0.073 0.927 20 H 0.040 0.960 21 H 0.116 0.884 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.274 0.726 29 H 0.091 0.909 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -7.696 -5.567 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.155 4.155 4 C -0.153 4.153 5 C 0.235 3.765 6 O -0.527 6.527 7 N -0.183 5.183 8 C -0.018 4.018 9 C -0.477 4.477 10 H 0.085 0.915 11 C -0.205 4.205 12 N -0.536 5.536 13 Si 0.813 3.187 14 H -0.188 1.188 15 H -0.196 1.196 16 H -0.203 1.203 17 C -0.152 4.152 18 H 0.084 0.916 19 H 0.092 0.908 20 H 0.059 0.941 21 H 0.134 0.866 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.133 0.867 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.949 -7.253 -5.471 10.860 hybrid contribution 0.587 0.816 0.940 1.376 sum -5.362 -6.437 -4.532 9.525 Atomic orbital electron populations 1.21705 0.93816 1.02494 1.01608 1.22451 0.96407 0.95826 0.96610 1.22851 0.96831 0.97777 0.98035 1.22675 0.99543 0.97366 0.95681 1.21106 0.82983 0.88333 0.84100 1.90435 1.57801 1.26578 1.77920 1.43864 1.36478 1.14646 1.23288 1.21399 0.95666 0.82770 1.02012 1.19626 1.01177 1.13942 1.12972 0.91522 1.26114 0.93766 0.98338 1.02287 1.70064 1.04242 1.39884 1.39453 0.84989 0.77607 0.78291 0.77770 1.18814 1.19625 1.20256 1.22920 0.96260 0.98121 0.97932 0.91627 0.90813 0.94126 0.86559 0.91782 0.90606 0.86737 0.94157 0.92593 0.91387 0.91663 0.89003 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.71 71.98 0.70 -2.25 16 2 C -0.09 -2.31 4.36 -10.27 -0.04 -2.35 16 3 C -0.12 -3.83 6.97 31.12 0.22 -3.61 16 4 C -0.13 -4.89 2.83 -11.01 -0.03 -4.92 16 5 C 0.44 23.06 7.15 87.66 0.63 23.68 16 6 O -0.64 -38.54 15.61 -3.07 -0.05 -38.59 16 7 N -0.46 -25.22 3.01 -658.88 -1.98 -27.21 16 8 C 0.12 5.68 8.30 127.77 1.06 6.74 16 9 C -0.35 -20.82 9.24 84.04 0.78 -20.04 16 10 H 0.07 4.26 7.45 -2.91 -0.02 4.24 16 11 C 0.00 -0.19 5.05 84.93 0.43 0.23 16 12 N -0.90 -49.05 10.83 21.66 0.23 -48.82 16 13 Si 0.99 43.74 29.57 68.60 2.03 45.77 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.11 -3.42 6.44 31.12 0.20 -3.22 16 18 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 19 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 20 H 0.04 0.98 7.94 -2.39 -0.02 0.96 16 21 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.06 2.46 7.39 -2.39 -0.02 2.44 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.11 3.85 7.88 -2.38 -0.02 3.83 16 25 H 0.04 1.88 7.83 -2.38 -0.02 1.86 16 26 H 0.06 2.70 6.79 -2.39 -0.02 2.69 16 27 H 0.07 2.49 5.97 -2.38 -0.01 2.47 16 28 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.09 2.28 7.69 -2.39 -0.02 2.26 16 30 H 0.06 2.12 7.91 -2.39 -0.02 2.10 16 Total: -1.00 -69.75 248.12 5.27 -64.47 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.11 Total: 10.10 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.93 Total: -5.73 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.75 Total: -76.02 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.05 Total: -38.59 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.75 5.27 -64.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306546200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.380 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds