Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48496 * 109.47141 * 59.99751 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00028 * 9 7 5 13 13 C 1.50704 * 109.47411 * 120.00212 * 2 1 3 14 14 N 1.31066 * 126.66392 * 75.02096 * 13 2 1 15 15 N 1.28839 * 107.99147 * 179.97438 * 14 13 2 16 16 N 1.28736 * 109.39931 * 0.02562 * 15 14 13 17 17 N 1.29023 * 108.80749 * 359.74599 * 16 15 14 18 18 C 1.46497 * 126.43961 * 180.24785 * 17 16 15 19 19 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 20 20 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 21 21 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 22 22 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 23 23 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 24 24 H 1.08997 * 109.47378 * 270.18050 * 18 17 16 25 25 H 1.09003 * 109.46849 * 30.17840 * 18 17 16 26 26 H 1.08991 * 109.47294 * 150.17246 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 3.7570 1.3957 -4.9279 11 1 3.3164 -0.6440 -6.1637 12 1 1.4824 0.8102 -5.5308 13 6 2.0324 -0.7105 1.2304 14 7 2.0371 -2.0042 1.4400 15 7 2.5450 -2.2168 2.6048 16 7 2.8640 -1.0922 3.1440 17 7 2.5680 -0.1397 2.3255 18 6 2.7736 1.2937 2.5474 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 2.2490 -1.6318 -1.1526 23 1 3.2571 -2.3939 -4.2397 24 1 1.8901 1.7179 3.0244 25 1 3.6404 1.4409 3.1918 26 1 2.9435 1.7887 1.5914 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306548033.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = 128.675753 kcal Electronic energy + Delta-G solvation = -12423.525962 eV Core-core repulsion = 10154.675679 eV Total energy + Delta-G solvation = -2268.850283 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.72128 -36.05954 -35.22186 -32.65066 -30.89157 -28.62580 -28.08753 -24.58632 -23.52583 -22.48360 -20.37941 -17.73652 -16.91696 -16.77653 -15.29077 -14.46763 -14.00094 -13.62791 -13.35704 -12.85394 -12.69991 -12.30854 -11.84468 -11.62475 -11.03820 -10.93846 -10.87728 -10.55450 -10.50789 -10.21593 -9.91183 -9.56577 -9.07738 -7.17658 -5.87134 -3.20853 1.62570 2.31970 2.72559 3.37188 3.41280 3.43850 4.37456 4.51523 4.53801 4.90093 5.01769 5.19369 5.44108 5.63564 5.73477 5.86842 5.98662 6.12422 6.32491 6.39149 6.56291 6.82545 7.54438 8.27388 9.04956 9.40536 9.90536 10.27882 11.33914 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.052466 B = 0.009536 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.549773 B = 2935.587762 C = 3080.947755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.254 3.746 3 H 0.069 0.931 4 N -0.711 5.711 5 C -0.258 4.258 6 H 0.075 0.925 7 C -0.003 4.003 8 N -0.921 5.921 9 Si 0.912 3.088 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.201 3.799 14 N -0.294 5.294 15 N -0.083 5.083 16 N -0.116 5.116 17 N -0.316 5.316 18 C 0.081 3.919 19 H 0.038 0.962 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.396 0.604 23 H 0.260 0.740 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 8.887 8.970 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.140 3.860 3 H 0.087 0.913 4 N -0.354 5.354 5 C -0.388 4.388 6 H 0.093 0.907 7 C -0.201 4.201 8 N -0.567 5.567 9 Si 0.742 3.258 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.210 1.210 13 C -0.078 4.078 14 N -0.143 5.143 15 N -0.077 5.077 16 N -0.102 5.102 17 N -0.118 5.118 18 C -0.061 4.061 19 H 0.057 0.943 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.232 0.768 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.840 7.803 9.583 12.495 hybrid contribution 0.157 1.070 -1.231 1.639 sum -1.683 8.873 8.352 12.301 Atomic orbital electron populations 1.22446 0.96358 1.02606 1.00795 1.18784 0.93221 0.93661 0.80320 0.91334 1.42406 1.77983 1.11240 1.03772 1.19138 1.38692 0.94192 0.86788 0.90748 1.24827 1.01056 0.95969 0.98279 1.69691 1.48916 1.08679 1.29390 0.86217 0.77891 0.78576 0.83112 1.21120 1.21535 1.20964 1.27185 0.97280 0.90470 0.92842 1.75022 1.17984 1.12060 1.09265 1.78543 1.11650 1.15477 1.02075 1.78732 1.20336 0.92594 1.18520 1.48397 1.41029 1.10043 1.12320 1.22314 1.04776 0.73446 1.05541 0.94324 0.90866 0.92042 0.76805 0.93046 0.88834 0.87977 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.47 37.16 0.35 -2.36 15 2 C 0.25 4.81 3.28 -69.08 -0.23 4.59 15 3 H 0.07 1.13 6.79 -51.93 -0.35 0.78 15 4 N -0.71 -17.52 5.11 -54.55 -0.28 -17.80 15 5 C -0.26 -6.77 9.93 -15.06 -0.15 -6.92 15 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 15 7 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 15 8 N -0.92 -27.56 13.06 55.49 0.72 -26.84 15 9 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 13 C 0.20 3.82 6.91 -155.43 -1.07 2.74 15 14 N -0.29 -6.42 12.09 32.70 0.40 -6.02 15 15 N -0.08 -1.74 13.43 60.35 0.81 -0.93 15 16 N -0.12 -2.11 13.29 60.35 0.80 -1.31 15 17 N -0.32 -5.00 3.75 -65.03 -0.24 -5.24 15 18 C 0.08 0.75 11.21 59.85 0.67 1.42 15 19 H 0.04 0.53 8.14 -51.93 -0.42 0.10 15 20 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.40 10.94 7.57 -40.82 -0.31 10.63 15 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.11 0.87 7.00 -51.93 -0.36 0.50 15 LS Contribution 236.11 15.07 3.56 3.56 Total: -1.00 -32.56 236.11 -2.46 -35.02 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.68 Total: 3.90 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.52 Total: -0.73 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 2.21 Total: -58.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.56 -2.46 -35.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306548033.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.697 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds