Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48496 * 109.47141 * 59.99751 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00028 * 9 7 5 13 13 C 1.50704 * 109.47411 * 120.00212 * 2 1 3 14 14 N 1.31066 * 126.66392 * 75.02096 * 13 2 1 15 15 N 1.28839 * 107.99147 * 179.97438 * 14 13 2 16 16 N 1.28736 * 109.39931 * 0.02562 * 15 14 13 17 17 N 1.29023 * 108.80749 * 359.74599 * 16 15 14 18 18 C 1.46497 * 126.43961 * 180.24785 * 17 16 15 19 19 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 20 20 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 21 21 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 22 22 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 23 23 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 24 24 H 1.08997 * 109.47378 * 270.18050 * 18 17 16 25 25 H 1.09003 * 109.46849 * 30.17840 * 18 17 16 26 26 H 1.08991 * 109.47294 * 150.17246 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 3.7570 1.3957 -4.9279 11 1 3.3164 -0.6440 -6.1637 12 1 1.4824 0.8102 -5.5308 13 6 2.0324 -0.7105 1.2304 14 7 2.0371 -2.0042 1.4400 15 7 2.5450 -2.2168 2.6048 16 7 2.8640 -1.0922 3.1440 17 7 2.5680 -0.1397 2.3255 18 6 2.7736 1.2937 2.5474 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 2.2490 -1.6318 -1.1526 23 1 3.2571 -2.3939 -4.2397 24 1 1.8901 1.7179 3.0244 25 1 3.6404 1.4409 3.1918 26 1 2.9435 1.7887 1.5914 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306548033.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = 103.833054 kcal Electronic energy + Delta-G solvation = -12424.603222 eV Core-core repulsion = 10154.675679 eV Total energy + Delta-G solvation = -2269.927543 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.15252 -37.68829 -36.54742 -34.46566 -32.52303 -30.27893 -29.17205 -26.28018 -25.16641 -23.90673 -21.87826 -19.49854 -18.30337 -18.13258 -17.01833 -16.18461 -15.57481 -14.75487 -14.54413 -14.52360 -14.12974 -13.60728 -13.26504 -13.13803 -12.73159 -12.64990 -12.44189 -12.20587 -11.96345 -11.78444 -11.76336 -11.14302 -10.90640 -9.14347 -7.92883 -5.26971 0.23490 1.14978 1.21885 1.52712 1.56205 1.62135 2.57227 3.06769 3.27392 3.44546 3.85854 4.01877 4.29986 4.37070 4.41946 4.49329 4.62864 4.82246 4.92820 5.02610 5.29247 5.44271 5.52815 6.23459 7.31400 7.58351 7.98627 8.24078 9.30323 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.052466 B = 0.009536 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.549773 B = 2935.587762 C = 3080.947755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.252 3.748 3 H 0.104 0.896 4 N -0.732 5.732 5 C -0.246 4.246 6 H 0.098 0.902 7 C -0.075 4.075 8 N -0.972 5.972 9 Si 0.980 3.020 10 H -0.272 1.272 11 H -0.304 1.304 12 H -0.272 1.272 13 C 0.193 3.807 14 N -0.333 5.333 15 N -0.116 5.116 16 N -0.108 5.108 17 N -0.296 5.296 18 C 0.061 3.939 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.036 0.964 22 H 0.376 0.624 23 H 0.251 0.749 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 11.843 9.724 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 H 0.121 0.879 4 N -0.373 5.373 5 C -0.377 4.377 6 H 0.115 0.885 7 C -0.267 4.267 8 N -0.621 5.621 9 Si 0.809 3.191 10 H -0.198 1.198 11 H -0.231 1.231 12 H -0.198 1.198 13 C -0.086 4.086 14 N -0.183 5.183 15 N -0.110 5.110 16 N -0.094 5.094 17 N -0.099 5.099 18 C -0.077 4.077 19 H 0.096 0.904 20 H 0.092 0.908 21 H 0.055 0.945 22 H 0.208 0.792 23 H 0.059 0.941 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.269 10.841 10.390 15.187 hybrid contribution 0.263 0.276 -1.287 1.343 sum -2.006 11.117 9.103 14.508 Atomic orbital electron populations 1.22303 0.94513 1.01678 1.02725 1.19094 0.94172 0.94472 0.78244 0.87850 1.42622 1.78530 1.10661 1.05460 1.19692 1.35823 0.94976 0.87198 0.88456 1.25715 1.02267 0.96751 1.02003 1.69889 1.51737 1.10756 1.29746 0.85121 0.78255 0.77130 0.78642 1.19801 1.23107 1.19787 1.26968 0.97977 0.89947 0.93751 1.74926 1.19136 1.14242 1.09971 1.78521 1.13356 1.16804 1.02316 1.78619 1.19477 0.92671 1.18652 1.48796 1.38591 1.11805 1.10688 1.23019 1.07572 0.69689 1.07465 0.90379 0.90833 0.94463 0.79186 0.94056 0.85307 0.85797 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.47 71.98 0.68 -4.05 15 2 C 0.25 8.95 3.28 44.24 0.14 9.10 15 3 H 0.10 2.96 6.79 -2.39 -0.02 2.94 15 4 N -0.73 -35.65 5.11 -326.49 -1.67 -37.32 15 5 C -0.25 -12.62 9.93 84.04 0.83 -11.78 15 6 H 0.10 4.43 7.83 -2.91 -0.02 4.41 15 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 15 8 N -0.97 -59.75 13.06 21.65 0.28 -59.47 15 9 Si 0.98 43.90 29.55 68.60 2.03 45.92 15 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 15 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 13 C 0.19 7.01 6.91 138.14 0.96 7.97 15 14 N -0.33 -14.60 12.09 -50.45 -0.61 -15.21 15 15 N -0.12 -4.86 13.43 37.01 0.50 -4.36 15 16 N -0.11 -3.74 13.29 37.02 0.49 -3.25 15 17 N -0.30 -8.55 3.75 -359.66 -1.35 -9.90 15 18 C 0.06 0.85 11.21 127.77 1.43 2.28 15 19 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 20 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.38 21.23 7.57 -92.71 -0.70 20.52 15 23 H 0.25 15.05 8.31 -92.70 -0.77 14.28 15 24 H 0.13 0.99 8.14 -2.39 -0.02 0.97 15 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 26 H 0.12 1.38 7.00 -2.39 -0.02 1.36 15 Total: -1.00 -72.40 236.11 4.68 -67.71 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.50 Total: 16.03 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 4.52 Total: -0.16 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -2.35 Total: -129.51 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.40 4.68 -67.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306548033.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.545 kcal (2) G-P(sol) polarization free energy of solvation -72.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds