Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99643 * 2 1 4 4 H 1.48502 * 109.47038 * 240.00130 * 3 2 1 5 5 H 1.48495 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 120.00527 * 3 2 1 7 7 C 1.38816 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99547 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99436 * 179.97438 * 9 7 2 11 11 H 1.08995 * 115.57575 * 350.73166 * 10 9 7 12 12 C 1.53056 * 117.50257 * 136.45888 * 10 9 7 13 13 C 1.52711 * 117.50229 * 204.99880 * 10 9 7 14 14 C 1.53254 * 117.83778 * 144.72210 * 13 10 9 15 15 C 1.53326 * 108.64912 * 265.28779 * 14 13 10 16 16 O 1.42873 * 109.32562 * 305.90748 * 15 14 13 17 17 C 1.42883 * 114.47370 * 64.41889 * 16 15 14 18 18 C 1.53343 * 109.31671 * 295.57855 * 17 16 15 19 19 H 0.96989 * 120.00051 * 0.02562 * 1 2 3 20 20 H 0.96997 * 120.00544 * 0.02562 * 9 7 2 21 21 H 1.09003 * 117.51010 * 0.02562 * 12 10 9 22 22 H 1.09004 * 117.53261 * 214.92460 * 12 10 9 23 23 H 1.09002 * 109.63614 * 145.48848 * 14 13 10 24 24 H 1.08999 * 109.63461 * 25.08584 * 14 13 10 25 25 H 1.08997 * 109.49453 * 65.86176 * 15 14 13 26 26 H 1.09001 * 109.49569 * 185.95068 * 15 14 13 27 27 H 1.09000 * 109.49061 * 55.52707 * 17 16 15 28 28 H 1.08997 * 109.49923 * 175.62186 * 17 16 15 29 29 H 1.09001 * 109.63275 * 173.69610 * 18 17 16 30 30 H 1.08992 * 109.63336 * 294.09977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 3.1338 -3.5789 -0.1608 12 6 1.5603 -4.7613 0.9334 13 6 1.3474 -4.8811 -0.5741 14 6 2.1920 -5.9074 -1.3369 15 6 2.1223 -5.5842 -2.8341 16 8 0.7540 -5.5156 -3.2398 17 6 0.0095 -4.4570 -2.6345 18 6 -0.0765 -4.6974 -1.1225 19 1 -0.4850 0.8399 -0.0004 20 1 0.3557 -2.3881 -0.0005 21 1 0.6873 -4.5442 1.5491 22 1 2.3078 -5.4105 1.3895 23 1 1.7997 -6.9089 -1.1598 24 1 3.2268 -5.8543 -0.9985 25 1 2.6059 -4.6257 -3.0222 26 1 2.6305 -6.3656 -3.3990 27 1 0.5087 -3.5067 -2.8239 28 1 -0.9951 -4.4312 -3.0565 29 1 -0.5453 -3.8390 -0.6412 30 1 -0.6653 -5.5935 -0.9270 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306652379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = -18.710473 kcal Electronic energy + Delta-G solvation = -12861.091323 eV Core-core repulsion = 10657.097486 eV Total energy + Delta-G solvation = -2203.993837 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.23026 -36.44742 -33.37833 -30.89337 -30.31785 -28.73487 -24.02113 -23.23115 -22.37600 -20.69202 -18.24486 -17.29547 -15.66994 -15.61597 -14.93429 -14.47645 -14.06214 -13.79274 -12.88485 -12.77959 -12.38410 -11.98803 -11.43687 -11.09419 -11.03284 -10.87103 -10.68728 -10.25470 -10.20143 -9.97618 -9.85728 -9.66559 -8.74094 -8.63539 -6.93195 -5.88743 -3.16686 3.38429 3.43106 3.44127 4.24908 4.47790 4.57186 5.10853 5.34716 5.38422 5.43783 5.48891 5.67317 5.71631 5.85461 5.95689 6.00905 6.07683 6.22361 6.26720 6.30015 6.41800 6.56764 6.66245 6.86203 6.89553 7.59622 7.61611 8.29969 9.40702 9.96337 10.30581 11.33205 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.009812 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.806951 B = 2853.000828 C = 2977.290804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.685 5.685 10 C 0.159 3.841 11 H 0.100 0.900 12 C -0.221 4.221 13 C -0.174 4.174 14 C -0.107 4.107 15 C 0.066 3.934 16 O -0.392 6.392 17 C 0.067 3.933 18 C -0.106 4.106 19 H 0.258 0.742 20 H 0.387 0.613 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -9.433 -2.959 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.044 3.956 11 H 0.117 0.883 12 C -0.262 4.262 13 C -0.177 4.177 14 C -0.145 4.145 15 C -0.011 4.011 16 O -0.311 6.311 17 C -0.010 4.010 18 C -0.144 4.144 19 H 0.068 0.932 20 H 0.223 0.777 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.729 -9.300 -3.098 10.175 hybrid contribution 0.154 0.967 0.400 1.057 sum 2.883 -8.333 -2.698 9.221 Atomic orbital electron populations 1.69647 1.05202 1.26198 1.56642 1.24795 0.95571 0.97936 1.02225 0.86200 0.78537 0.83068 0.77974 1.21074 1.21573 1.21074 1.19258 0.91213 0.83766 1.43884 0.90833 1.42072 1.05816 0.99209 1.84880 1.21020 0.94569 0.82090 0.97888 0.88257 1.23632 1.03914 1.07180 0.91494 1.22046 0.97208 1.03353 0.95136 1.21655 0.99232 0.98159 0.95460 1.22516 0.83282 1.00964 0.94331 1.87765 1.22396 1.53244 1.67718 1.22558 0.95787 0.90162 0.92444 1.21605 0.95023 1.01643 0.96086 0.93175 0.77692 0.89736 0.90174 0.91894 0.91473 0.93023 0.89793 0.92212 0.89620 0.90401 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.86 9.98 -15.06 -0.15 -7.01 16 8 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 9 N -0.68 -17.12 5.39 -53.54 -0.29 -17.41 16 10 C 0.16 3.25 6.29 -68.05 -0.43 2.83 16 11 H 0.10 1.97 8.12 -51.93 -0.42 1.55 16 12 C -0.22 -3.99 9.94 -26.85 -0.27 -4.26 16 13 C -0.17 -3.07 2.04 -154.31 -0.32 -3.39 16 14 C -0.11 -1.60 5.90 -26.43 -0.16 -1.76 16 15 C 0.07 0.99 6.84 37.33 0.26 1.24 16 16 O -0.39 -6.70 10.69 -35.23 -0.38 -7.08 16 17 C 0.07 1.16 6.85 37.34 0.26 1.41 16 18 C -0.11 -1.88 5.76 -26.20 -0.15 -2.03 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.39 10.19 6.06 -40.82 -0.25 9.94 16 21 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 22 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.53 6.18 -51.93 -0.32 1.21 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 248.83 15.07 3.75 3.75 Total: -1.00 -29.11 248.83 -6.60 -35.72 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.34 Total: 8.14 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.05 Total: -13.30 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.44 Total: -44.19 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.11 -6.60 -35.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306652379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.006 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds