Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99643 * 2 1 4 4 H 1.48502 * 109.47038 * 240.00130 * 3 2 1 5 5 H 1.48495 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 120.00527 * 3 2 1 7 7 C 1.38816 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99547 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99436 * 179.97438 * 9 7 2 11 11 H 1.08995 * 115.57575 * 350.73166 * 10 9 7 12 12 C 1.53056 * 117.50257 * 136.45888 * 10 9 7 13 13 C 1.52711 * 117.50229 * 204.99880 * 10 9 7 14 14 C 1.53254 * 117.83778 * 144.72210 * 13 10 9 15 15 C 1.53326 * 108.64912 * 265.28779 * 14 13 10 16 16 O 1.42873 * 109.32562 * 305.90748 * 15 14 13 17 17 C 1.42883 * 114.47370 * 64.41889 * 16 15 14 18 18 C 1.53343 * 109.31671 * 295.57855 * 17 16 15 19 19 H 0.96989 * 120.00051 * 0.02562 * 1 2 3 20 20 H 0.96997 * 120.00544 * 0.02562 * 9 7 2 21 21 H 1.09003 * 117.51010 * 0.02562 * 12 10 9 22 22 H 1.09004 * 117.53261 * 214.92460 * 12 10 9 23 23 H 1.09002 * 109.63614 * 145.48848 * 14 13 10 24 24 H 1.08999 * 109.63461 * 25.08584 * 14 13 10 25 25 H 1.08997 * 109.49453 * 65.86176 * 15 14 13 26 26 H 1.09001 * 109.49569 * 185.95068 * 15 14 13 27 27 H 1.09000 * 109.49061 * 55.52707 * 17 16 15 28 28 H 1.08997 * 109.49923 * 175.62186 * 17 16 15 29 29 H 1.09001 * 109.63275 * 173.69610 * 18 17 16 30 30 H 1.08992 * 109.63336 * 294.09977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 3.1338 -3.5789 -0.1608 12 6 1.5603 -4.7613 0.9334 13 6 1.3474 -4.8811 -0.5741 14 6 2.1920 -5.9074 -1.3369 15 6 2.1223 -5.5842 -2.8341 16 8 0.7540 -5.5156 -3.2398 17 6 0.0095 -4.4570 -2.6345 18 6 -0.0765 -4.6974 -1.1225 19 1 -0.4850 0.8399 -0.0004 20 1 0.3557 -2.3881 -0.0005 21 1 0.6873 -4.5442 1.5491 22 1 2.3078 -5.4105 1.3895 23 1 1.7997 -6.9089 -1.1598 24 1 3.2268 -5.8543 -0.9985 25 1 2.6059 -4.6257 -3.0222 26 1 2.6305 -6.3656 -3.3990 27 1 0.5087 -3.5067 -2.8239 28 1 -0.9951 -4.4312 -3.0565 29 1 -0.5453 -3.8390 -0.6412 30 1 -0.6653 -5.5935 -0.9270 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306652379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -37.525482 kcal Electronic energy + Delta-G solvation = -12861.907203 eV Core-core repulsion = 10657.097486 eV Total energy + Delta-G solvation = -2204.809717 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63791 -37.93843 -35.29920 -32.39226 -31.96899 -30.29833 -25.99361 -24.60902 -23.73585 -22.29092 -19.80396 -19.18625 -17.14489 -16.93471 -16.68087 -15.88746 -15.68666 -15.52681 -14.50296 -14.26476 -13.80406 -13.40159 -13.07542 -12.96769 -12.79985 -12.32712 -12.27661 -12.14339 -11.93377 -11.44783 -11.42967 -11.18018 -10.60488 -10.06837 -8.85445 -8.00173 -5.27866 1.46462 1.49189 1.55493 2.51957 2.97459 3.02601 3.42926 3.64551 3.90528 4.04271 4.15097 4.18109 4.28260 4.37375 4.59943 4.66385 4.79003 4.82457 4.88861 4.96507 5.03255 5.19486 5.27465 5.30885 5.46593 5.48835 6.21666 6.29180 7.27555 8.01462 8.25106 9.22694 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.009812 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.806951 B = 2853.000828 C = 2977.290804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.702 5.702 10 C 0.125 3.875 11 H 0.105 0.895 12 C -0.205 4.205 13 C -0.157 4.157 14 C -0.103 4.103 15 C 0.059 3.941 16 O -0.398 6.398 17 C 0.073 3.927 18 C -0.107 4.107 19 H 0.253 0.747 20 H 0.376 0.624 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.118 0.882 27 H 0.032 0.968 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -10.953 -3.185 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.098 0.902 9 N -0.338 5.338 10 C 0.013 3.987 11 H 0.123 0.877 12 C -0.245 4.245 13 C -0.160 4.160 14 C -0.140 4.140 15 C -0.017 4.017 16 O -0.317 6.317 17 C -0.004 4.004 18 C -0.144 4.144 19 H 0.062 0.938 20 H 0.210 0.790 21 H 0.090 0.910 22 H 0.127 0.873 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.136 0.864 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.037 -10.878 -3.322 12.069 hybrid contribution -0.205 1.317 0.468 1.412 sum 3.832 -9.562 -2.854 10.689 Atomic orbital electron populations 1.69806 1.06684 1.26415 1.58824 1.25605 0.96403 1.01227 1.03153 0.85166 0.77193 0.78835 0.78284 1.20235 1.22166 1.20259 1.19666 0.91707 0.84906 1.42011 0.90194 1.42155 1.05412 1.00288 1.85913 1.21280 0.94821 0.81537 1.01076 0.87744 1.23601 1.03689 1.05427 0.91814 1.22115 0.97050 1.01624 0.95249 1.21704 0.99809 0.97739 0.94793 1.22746 0.82339 1.01607 0.94991 1.87766 1.23438 1.52645 1.67831 1.22456 0.96491 0.89146 0.92313 1.21602 0.95361 1.01267 0.96218 0.93821 0.78993 0.91048 0.87329 0.90172 0.89549 0.94272 0.86405 0.95002 0.88026 0.92980 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.25 -13.91 9.98 84.03 0.84 -13.07 16 8 H 0.08 4.20 7.82 -2.91 -0.02 4.17 16 9 N -0.70 -35.69 5.39 -323.31 -1.74 -37.43 16 10 C 0.12 5.01 6.29 44.91 0.28 5.29 16 11 H 0.10 4.02 8.12 -2.39 -0.02 4.00 16 12 C -0.20 -7.01 9.94 30.52 0.30 -6.70 16 13 C -0.16 -5.27 2.04 -52.05 -0.11 -5.38 16 14 C -0.10 -2.71 5.90 30.79 0.18 -2.53 16 15 C 0.06 1.61 6.84 72.09 0.49 2.10 16 16 O -0.40 -12.73 10.69 -148.98 -1.59 -14.32 16 17 C 0.07 2.47 6.85 72.10 0.49 2.96 16 18 C -0.11 -3.70 5.76 30.94 0.18 -3.52 16 19 H 0.25 14.93 8.31 -92.72 -0.77 14.16 16 20 H 0.38 20.48 6.06 -92.71 -0.56 19.91 16 21 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 23 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 24 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.05 2.09 6.18 -2.39 -0.01 2.07 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -62.32 248.83 2.66 -59.65 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.56 Total: 27.37 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 3.13 Total: -24.44 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -1.46 Total: -95.96 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.59 Total: -14.32 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -62.32 2.66 -59.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306652379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.128 kcal (2) G-P(sol) polarization free energy of solvation -62.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds