Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46816 * 2 1 4 4 C 1.53002 * 115.54923 * 325.66134 * 3 2 1 5 5 C 1.52996 * 117.50249 * 111.38028 * 3 2 1 6 6 C 1.52994 * 60.00323 * 107.48804 * 5 3 2 7 7 H 1.09000 * 117.51643 * 252.52049 * 6 5 3 8 8 N 1.46500 * 117.50306 * 107.49369 * 6 5 3 9 9 C 1.34773 * 120.00431 * 136.37873 * 8 6 5 10 10 O 1.21693 * 119.99830 * 359.97438 * 9 8 6 11 11 C 1.46368 * 120.00188 * 179.72417 * 9 8 6 12 12 H 1.08001 * 120.00155 * 0.27756 * 11 9 8 13 13 C 1.40047 * 120.00322 * 180.27118 * 11 9 8 14 14 N 1.30674 * 119.99675 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00219 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47159 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47290 * 120.00211 * 15 13 11 18 18 H 1.48503 * 109.47163 * 240.00216 * 15 13 11 19 19 H 1.08997 * 109.47147 * 60.00610 * 1 2 3 20 20 H 1.09009 * 109.46879 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47043 * 300.00005 * 1 2 3 22 22 H 1.09002 * 109.47283 * 239.99560 * 2 1 3 23 23 H 1.09000 * 109.46660 * 119.99465 * 2 1 3 24 24 H 1.08992 * 109.47853 * 274.33261 * 4 3 2 25 25 H 1.09005 * 109.46834 * 34.33880 * 4 3 2 26 26 H 1.09005 * 109.47002 * 154.33104 * 4 3 2 27 27 H 1.08997 * 117.49924 * 359.97438 * 5 3 2 28 28 H 1.08997 * 117.49644 * 214.98036 * 5 3 2 29 29 H 0.97000 * 119.99456 * 316.37436 * 8 6 5 30 30 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4445 -0.7787 5 6 2.7418 1.9437 1.2637 6 6 3.5549 1.6563 0.0000 7 1 4.1883 0.7692 -0.0003 8 7 4.0761 2.8050 -0.7451 9 6 5.3403 2.7881 -1.2119 10 8 6.0490 1.8189 -1.0142 11 6 5.8589 3.9333 -1.9615 12 1 5.2301 4.7937 -2.1366 13 6 7.1707 3.9135 -2.4515 14 7 7.9315 2.8723 -2.2400 15 14 7.8329 5.3753 -3.4075 16 1 6.7808 6.4184 -3.5084 17 1 9.0158 5.9325 -2.7036 18 1 8.2287 4.9374 -4.7702 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.4777 2.4331 -1.8285 25 1 0.1338 2.1703 -0.6913 26 1 1.3350 3.4442 -0.3706 27 1 2.8400 1.2460 2.0953 28 1 2.5945 2.9876 1.5407 29 1 3.5112 3.5776 -0.9024 30 1 8.8400 2.8584 -2.5797 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306660511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -31.659090 kcal Electronic energy + Delta-G solvation = -12426.652773 eV Core-core repulsion = 10222.097442 eV Total energy + Delta-G solvation = -2204.555331 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67784 -36.45828 -32.88349 -32.26109 -30.43834 -27.87781 -26.22010 -23.57574 -21.65627 -19.50052 -18.36989 -17.15611 -15.49068 -14.95345 -14.73343 -14.32642 -13.76396 -13.07020 -12.64124 -12.45139 -12.07082 -12.01467 -11.80949 -11.45773 -11.10183 -11.05476 -10.86496 -10.59346 -10.48146 -10.20193 -9.96606 -9.19007 -8.84631 -7.62551 -7.29398 -6.19520 -4.65069 3.12985 3.21093 3.25707 4.09185 4.22923 4.62910 4.67303 5.11853 5.21130 5.32117 5.46412 5.50489 5.76295 5.77916 5.94608 6.02338 6.12019 6.15964 6.19964 6.26671 6.37382 6.45532 6.64077 6.71757 7.42910 7.91768 8.11692 8.33828 9.01631 9.52741 10.59338 10.77586 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069361 B = 0.007728 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.587840 B = 3622.127010 C = 3788.243364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.116 4.116 5 C -0.202 4.202 6 C 0.122 3.878 7 H 0.124 0.876 8 N -0.734 5.734 9 C 0.555 3.445 10 O -0.580 6.580 11 C -0.544 4.544 12 H 0.068 0.932 13 C 0.087 3.913 14 N -0.767 5.767 15 Si 0.908 3.092 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 H 0.058 0.942 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.382 0.618 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -0.611 2.640 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.156 4.156 4 C -0.173 4.173 5 C -0.241 4.241 6 C 0.013 3.987 7 H 0.142 0.858 8 N -0.385 5.385 9 C 0.360 3.640 10 O -0.462 6.462 11 C -0.581 4.581 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.733 3.267 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.201 1.201 19 H 0.076 0.924 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.214 0.786 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.611 -1.401 2.732 11.046 hybrid contribution 0.013 1.133 -0.409 1.205 sum -10.597 -0.269 2.323 10.852 Atomic orbital electron populations 1.21817 0.96137 1.00853 1.01758 1.20994 0.95298 0.93965 1.01791 1.22011 0.96207 0.96002 1.01345 1.21341 0.98802 0.97274 0.99897 1.23678 1.06751 1.01347 0.92369 1.21374 0.89793 0.93630 0.93859 0.85795 1.45654 1.15671 1.17462 1.59729 1.18265 0.78579 0.88342 0.78827 1.90590 1.57190 1.36543 1.61901 1.20907 0.98412 1.02403 1.36399 0.91364 1.25712 0.96532 0.96249 0.94756 1.70035 1.06983 1.27393 1.35189 0.86305 0.79216 0.81717 0.79459 1.18775 1.20134 1.20127 0.92350 0.93290 0.92880 0.91784 0.92074 0.92188 0.92067 0.92913 0.89358 0.89421 0.78641 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.92 37.16 0.33 -1.31 16 2 C -0.08 -1.12 6.12 -26.73 -0.16 -1.29 16 3 C -0.15 -2.40 2.47 -154.51 -0.38 -2.78 16 4 C -0.12 -1.63 8.49 37.16 0.32 -1.32 16 5 C -0.20 -3.30 9.75 -26.74 -0.26 -3.56 16 6 C 0.12 2.46 6.13 -67.93 -0.42 2.05 16 7 H 0.12 2.80 7.40 -51.93 -0.38 2.41 16 8 N -0.73 -16.95 5.34 -55.22 -0.29 -17.24 16 9 C 0.56 16.10 7.75 -12.99 -0.10 16.00 16 10 O -0.58 -19.04 14.59 5.20 0.08 -18.97 16 11 C -0.54 -15.56 9.54 -35.63 -0.34 -15.90 16 12 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 13 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 14 N -0.77 -23.22 11.83 55.55 0.66 -22.57 16 15 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 16 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 19 H 0.06 0.63 6.45 -51.93 -0.33 0.29 16 20 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.73 5.58 -51.93 -0.29 0.44 16 26 H 0.05 0.72 7.61 -51.93 -0.40 0.33 16 27 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 28 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 29 H 0.38 7.84 7.67 -40.82 -0.31 7.53 16 30 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 254.71 15.07 3.84 3.84 Total: -1.00 -33.14 254.71 -6.06 -39.20 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.20 Total: 6.27 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.11 Total: -5.75 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.36 Total: -39.81 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.14 -6.06 -39.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306660511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.542 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds