Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46816 * 2 1 4 4 C 1.53002 * 115.54923 * 325.66134 * 3 2 1 5 5 C 1.52996 * 117.50249 * 111.38028 * 3 2 1 6 6 C 1.52994 * 60.00323 * 107.48804 * 5 3 2 7 7 H 1.09000 * 117.51643 * 252.52049 * 6 5 3 8 8 N 1.46500 * 117.50306 * 107.49369 * 6 5 3 9 9 C 1.34773 * 120.00431 * 136.37873 * 8 6 5 10 10 O 1.21693 * 119.99830 * 359.97438 * 9 8 6 11 11 C 1.46368 * 120.00188 * 179.72417 * 9 8 6 12 12 H 1.08001 * 120.00155 * 0.27756 * 11 9 8 13 13 C 1.40047 * 120.00322 * 180.27118 * 11 9 8 14 14 N 1.30674 * 119.99675 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00219 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47159 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47290 * 120.00211 * 15 13 11 18 18 H 1.48503 * 109.47163 * 240.00216 * 15 13 11 19 19 H 1.08997 * 109.47147 * 60.00610 * 1 2 3 20 20 H 1.09009 * 109.46879 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47043 * 300.00005 * 1 2 3 22 22 H 1.09002 * 109.47283 * 239.99560 * 2 1 3 23 23 H 1.09000 * 109.46660 * 119.99465 * 2 1 3 24 24 H 1.08992 * 109.47853 * 274.33261 * 4 3 2 25 25 H 1.09005 * 109.46834 * 34.33880 * 4 3 2 26 26 H 1.09005 * 109.47002 * 154.33104 * 4 3 2 27 27 H 1.08997 * 117.49924 * 359.97438 * 5 3 2 28 28 H 1.08997 * 117.49644 * 214.98036 * 5 3 2 29 29 H 0.97000 * 119.99456 * 316.37436 * 8 6 5 30 30 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4445 -0.7787 5 6 2.7418 1.9437 1.2637 6 6 3.5549 1.6563 0.0000 7 1 4.1883 0.7692 -0.0003 8 7 4.0761 2.8050 -0.7451 9 6 5.3403 2.7881 -1.2119 10 8 6.0490 1.8189 -1.0142 11 6 5.8589 3.9333 -1.9615 12 1 5.2301 4.7937 -2.1366 13 6 7.1707 3.9135 -2.4515 14 7 7.9315 2.8723 -2.2400 15 14 7.8329 5.3753 -3.4075 16 1 6.7808 6.4184 -3.5084 17 1 9.0158 5.9325 -2.7036 18 1 8.2287 4.9374 -4.7702 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.4777 2.4331 -1.8285 25 1 0.1338 2.1703 -0.6913 26 1 1.3350 3.4442 -0.3706 27 1 2.8400 1.2460 2.0953 28 1 2.5945 2.9876 1.5407 29 1 3.5112 3.5776 -0.9024 30 1 8.8400 2.8584 -2.5797 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306660511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -54.930779 kcal Electronic energy + Delta-G solvation = -12427.661909 eV Core-core repulsion = 10222.097442 eV Total energy + Delta-G solvation = -2205.564468 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.25574 -38.43303 -34.78928 -34.09530 -32.01441 -29.07852 -28.33802 -24.64538 -23.41072 -21.38721 -19.84925 -19.02396 -17.55731 -16.63721 -16.22541 -15.53943 -15.32835 -14.80744 -14.56279 -13.95169 -13.51027 -13.39567 -13.01091 -12.93128 -12.81850 -12.66765 -12.50701 -12.01950 -11.96975 -11.70716 -11.49505 -10.94751 -10.58753 -9.89269 -9.12921 -8.31490 -6.88293 1.39677 1.39910 1.58353 2.23532 2.40101 2.90181 3.01344 3.62333 3.83188 3.96199 4.10017 4.20679 4.46554 4.61047 4.74499 4.87509 4.94167 4.97625 5.06227 5.11191 5.20673 5.29862 5.32015 5.38023 5.58006 5.85998 6.20483 6.30864 6.84125 7.52558 8.47166 8.65382 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069361 B = 0.007728 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.587840 B = 3622.127010 C = 3788.243364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.179 4.179 6 C 0.068 3.932 7 H 0.087 0.913 8 N -0.722 5.722 9 C 0.537 3.463 10 O -0.633 6.633 11 C -0.573 4.573 12 H 0.088 0.912 13 C 0.027 3.973 14 N -0.823 5.823 15 Si 1.002 2.998 16 H -0.246 1.246 17 H -0.268 1.268 18 H -0.268 1.268 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.395 0.605 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.266 0.905 2.534 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.125 4.125 4 C -0.174 4.174 5 C -0.218 4.218 6 C -0.039 4.039 7 H 0.105 0.895 8 N -0.373 5.373 9 C 0.342 3.658 10 O -0.521 6.521 11 C -0.609 4.609 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.452 5.452 15 Si 0.820 3.180 16 H -0.169 1.169 17 H -0.193 1.193 18 H -0.192 1.192 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.229 0.771 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.591 0.120 2.652 12.867 hybrid contribution 0.538 0.585 -0.317 0.856 sum -12.053 0.705 2.336 12.297 Atomic orbital electron populations 1.21778 0.93465 1.02224 1.02485 1.21078 0.97549 0.92294 1.01573 1.22158 0.92489 0.97858 1.00032 1.21413 1.00133 0.97118 0.98785 1.23724 1.03729 1.02462 0.91911 1.21429 0.92532 0.92026 0.97959 0.89479 1.45209 1.14160 1.18728 1.59224 1.18672 0.80024 0.88044 0.79044 1.90538 1.59184 1.38307 1.64035 1.21452 0.99626 1.02986 1.36861 0.89391 1.27025 0.96465 0.99867 0.95423 1.70203 1.07793 1.30508 1.36725 0.84921 0.78673 0.76924 0.77433 1.16909 1.19250 1.19237 0.91833 0.91772 0.91822 0.92937 0.91621 0.93340 0.89075 0.92314 0.87760 0.88389 0.77123 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.92 71.98 0.64 -2.03 16 2 C -0.09 -2.22 6.12 30.59 0.19 -2.04 16 3 C -0.12 -3.69 2.47 -52.18 -0.13 -3.82 16 4 C -0.12 -3.02 8.49 71.98 0.61 -2.41 16 5 C -0.18 -5.59 9.75 30.59 0.30 -5.29 16 6 C 0.07 2.81 6.13 44.99 0.28 3.08 16 7 H 0.09 4.22 7.40 -2.39 -0.02 4.20 16 8 N -0.72 -34.12 5.34 -446.84 -2.39 -36.50 16 9 C 0.54 32.37 7.75 86.36 0.67 33.04 16 10 O -0.63 -43.97 14.59 -4.33 -0.06 -44.04 16 11 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 12 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 13 C 0.03 1.54 5.50 85.30 0.47 2.01 16 14 N -0.82 -51.39 11.83 21.84 0.26 -51.13 16 15 Si 1.00 41.39 29.56 68.60 2.03 43.42 16 16 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 19 H 0.06 1.14 6.45 -2.39 -0.02 1.12 16 20 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.61 7.90 -2.39 -0.02 1.59 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.83 5.58 -2.38 -0.01 1.81 16 26 H 0.06 1.44 7.61 -2.38 -0.02 1.42 16 27 H 0.10 2.91 8.05 -2.39 -0.02 2.90 16 28 H 0.10 2.88 8.05 -2.39 -0.02 2.86 16 29 H 0.39 16.19 7.67 -92.71 -0.71 15.48 16 30 H 0.28 15.45 8.29 -92.71 -0.77 14.68 16 Total: -1.00 -75.20 254.71 3.52 -71.69 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.42 Total: 27.01 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.26 Total: -10.44 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -2.13 Total: -87.63 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.06 Total: -44.04 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -75.20 3.52 -71.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306660511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.755 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds