Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.52993 * 115.56281 * 34.31118 * 3 2 1 5 5 C 1.53006 * 117.49967 * 248.62473 * 3 2 1 6 6 C 1.53006 * 60.00132 * 252.50954 * 5 3 2 7 7 H 1.08995 * 117.49838 * 252.48863 * 6 5 3 8 8 N 1.46502 * 117.49874 * 107.48409 * 6 5 3 9 9 C 1.34773 * 119.99692 * 136.39685 * 8 6 5 10 10 O 1.21688 * 119.99819 * 0.02562 * 9 8 6 11 11 C 1.46374 * 120.00177 * 180.02562 * 9 8 6 12 12 H 1.08001 * 119.99739 * 8.47259 * 11 9 8 13 13 C 1.40050 * 120.00081 * 188.46968 * 11 9 8 14 14 N 1.30673 * 120.00017 * 192.78644 * 13 11 9 15 15 Si 1.86798 * 120.00119 * 12.79008 * 13 11 9 16 16 H 1.48500 * 109.47230 * 269.99985 * 15 13 11 17 17 H 1.48500 * 109.47190 * 29.99549 * 15 13 11 18 18 H 1.48497 * 109.47351 * 149.99921 * 15 13 11 19 19 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.46980 * 300.00364 * 1 2 3 21 21 H 1.09001 * 109.47320 * 59.99809 * 1 2 3 22 22 H 1.09004 * 109.47050 * 240.00039 * 2 1 3 23 23 H 1.09001 * 109.47320 * 120.00191 * 2 1 3 24 24 H 1.09001 * 109.47488 * 205.68797 * 4 3 2 25 25 H 1.09003 * 109.47350 * 325.68526 * 4 3 2 26 26 H 1.09002 * 109.47497 * 85.69112 * 4 3 2 27 27 H 1.08994 * 117.50340 * 145.01945 * 5 3 2 28 28 H 1.09004 * 117.49529 * 359.97438 * 5 3 2 29 29 H 0.96997 * 120.00472 * 316.39615 * 8 6 5 30 30 H 0.96999 * 119.99434 * 354.71565 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7419 1.9437 -1.2638 6 6 3.5551 1.6562 -0.0001 7 1 3.9431 2.5109 0.5540 8 7 4.4063 0.4638 -0.0001 9 6 5.6587 0.5300 0.4934 10 8 6.0822 1.5800 0.9395 11 6 6.5094 -0.6611 0.4929 12 1 6.1884 -1.5537 -0.0235 13 6 7.7396 -0.6433 1.1621 14 7 8.6069 -1.5997 0.9605 15 14 8.1406 0.7476 2.3428 16 1 8.8089 1.8479 1.6027 17 1 6.8862 1.2538 2.9556 18 1 9.0453 0.2469 3.4086 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.3352 3.4444 0.3696 25 1 0.1339 2.1708 0.6907 26 1 1.4777 2.4340 1.8280 27 1 2.5947 2.9875 -1.5410 28 1 2.8406 1.2455 -2.0951 29 1 4.0686 -0.3732 -0.3553 30 1 8.3698 -2.3608 0.4079 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306660512.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -66.524836 kcal Electronic energy + Delta-G solvation = -12530.596461 eV Core-core repulsion = 10324.529238 eV Total energy + Delta-G solvation = -2206.067224 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50656 -38.82017 -35.12965 -34.28492 -32.44605 -29.07336 -28.06378 -24.77307 -23.30220 -21.64497 -20.19843 -19.53340 -17.44107 -17.24585 -15.99692 -15.55942 -15.48423 -15.04152 -14.78474 -14.31216 -14.09420 -13.99111 -13.13990 -12.84684 -12.73717 -12.61393 -12.30737 -12.06557 -11.71144 -11.64589 -11.37314 -11.12637 -10.62810 -10.14665 -9.35864 -9.22157 -7.15363 1.41885 1.51948 1.94253 2.11904 2.38286 2.77065 2.85276 3.33037 3.71720 3.92249 4.02313 4.14420 4.44375 4.58203 4.72809 4.78440 4.89123 4.95505 5.01977 5.09302 5.17257 5.28029 5.34893 5.45803 5.50448 5.55009 5.86054 6.05946 6.61315 7.13500 7.99176 8.07952 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054512 B = 0.009099 C = 0.008511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.528341 B = 3076.467165 C = 3289.180897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.178 4.178 6 C 0.065 3.935 7 H 0.104 0.896 8 N -0.713 5.713 9 C 0.551 3.449 10 O -0.643 6.643 11 C -0.620 4.620 12 H 0.065 0.935 13 C 0.031 3.969 14 N -0.846 5.846 15 Si 1.154 2.846 16 H -0.292 1.292 17 H -0.290 1.290 18 H -0.299 1.299 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.397 0.603 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 3.762 -2.255 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.125 4.125 4 C -0.174 4.174 5 C -0.217 4.217 6 C -0.042 4.042 7 H 0.122 0.878 8 N -0.361 5.361 9 C 0.357 3.643 10 O -0.537 6.537 11 C -0.656 4.656 12 H 0.083 0.917 13 C -0.184 4.184 14 N -0.474 5.474 15 Si 0.984 3.016 16 H -0.219 1.219 17 H -0.217 1.217 18 H -0.229 1.229 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.232 0.768 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.357 4.974 -1.067 15.232 hybrid contribution -0.966 -1.401 -1.500 2.268 sum -15.323 3.573 -2.567 15.942 Atomic orbital electron populations 1.21774 0.93403 1.02156 1.02596 1.21025 0.97646 0.92809 1.01329 1.22166 0.92281 0.97759 1.00256 1.21484 1.00023 0.97072 0.98832 1.23754 1.03246 1.02875 0.91791 1.21641 0.88918 0.91012 1.02651 0.87848 1.44944 1.13353 1.11787 1.66011 1.18290 0.81092 0.88613 0.76335 1.90185 1.74373 1.33759 1.55376 1.22180 1.06093 0.99548 1.37815 0.91667 1.27819 0.91052 1.02687 0.96839 1.70640 1.34166 1.09112 1.33434 0.82167 0.74652 0.71009 0.73811 1.21946 1.21721 1.22896 0.92093 0.91542 0.91779 0.92147 0.92935 0.91780 0.89247 0.93008 0.87094 0.88721 0.76808 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.92 71.98 0.64 -1.92 16 2 C -0.09 -2.22 5.12 30.59 0.16 -2.06 16 3 C -0.12 -3.31 2.47 -52.18 -0.13 -3.44 16 4 C -0.12 -2.57 9.49 71.98 0.68 -1.88 16 5 C -0.18 -4.96 9.75 30.60 0.30 -4.66 16 6 C 0.06 2.38 6.13 45.00 0.28 2.66 16 7 H 0.10 4.32 7.40 -2.39 -0.02 4.30 16 8 N -0.71 -31.20 5.34 -446.81 -2.39 -33.59 16 9 C 0.55 30.21 7.49 86.36 0.65 30.85 16 10 O -0.64 -38.13 11.78 -4.31 -0.05 -38.18 16 11 C -0.62 -35.92 9.92 24.83 0.25 -35.67 16 12 H 0.07 3.73 8.06 -2.91 -0.02 3.70 16 13 C 0.03 1.81 5.52 85.30 0.47 2.28 16 14 N -0.85 -49.42 13.64 21.84 0.30 -49.12 16 15 Si 1.15 60.77 26.39 68.60 1.81 62.58 16 16 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 17 H -0.29 -15.82 6.45 99.48 0.64 -15.18 16 18 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 19 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.07 1.10 6.45 -2.39 -0.02 1.08 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.47 7.61 -2.38 -0.02 1.46 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.29 7.90 -2.39 -0.02 1.27 16 25 H 0.09 1.54 5.59 -2.39 -0.01 1.52 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 2.68 8.05 -2.39 -0.02 2.66 16 28 H 0.09 2.56 8.05 -2.38 -0.02 2.54 16 29 H 0.40 15.61 7.67 -92.71 -0.71 14.89 16 30 H 0.28 15.69 8.72 -92.71 -0.81 14.88 16 Total: -1.00 -66.28 250.68 3.28 -63.00 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.31 Total: 9.16 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.29 Total: -13.86 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.09 Total: -82.71 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.05 Total: -38.18 kcal Atomic # 14 Polarization: 60.77 SS G_CDS: 1.81 Total: 62.58 kcal Total: -66.28 3.28 -63.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306660512.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.521 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds