Wall clock time and date at job start Mon Mar 30 2020 02:38:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.69817 * 2 1
4 4 C 1.53348 * 109.67560 * 120.52377 * 2 1 3
5 5 C 1.52911 * 108.67511 * 52.20069 * 4 2 1
6 6 N 1.45751 * 110.49170 * 50.75108 * 5 4 2
7 7 C 1.37096 * 117.94674 * 160.91995 * 6 5 4
8 8 H 1.08008 * 120.00198 * 201.32093 * 7 6 5
9 9 C 1.38952 * 120.00179 * 21.05585 * 7 6 5
10 10 N 1.31409 * 119.99931 * 18.28154 * 9 7 6
11 11 Si 1.86801 * 120.00013 * 198.28959 * 9 7 6
12 12 H 1.48494 * 109.47326 * 89.99893 * 11 9 7
13 13 H 1.48508 * 109.46779 * 209.99466 * 11 9 7
14 14 H 1.48494 * 109.47141 * 329.99187 * 11 9 7
15 15 C 1.33356 * 124.10586 * 341.20683 * 6 5 4
16 16 O 1.21294 * 118.24458 * 181.93583 * 15 6 5
17 17 C 1.50156 * 123.51944 * 1.66587 * 15 6 5
18 18 H 1.08997 * 109.46769 * 299.47628 * 1 2 3
19 19 H 1.08997 * 109.47426 * 59.48197 * 1 2 3
20 20 H 1.09000 * 109.47083 * 179.48267 * 1 2 3
21 21 H 1.08999 * 109.46762 * 180.51906 * 3 2 1
22 22 H 1.08995 * 109.47806 * 300.51817 * 3 2 1
23 23 H 1.09004 * 109.47113 * 60.52578 * 3 2 1
24 24 H 1.09003 * 109.59709 * 292.44380 * 4 2 1
25 25 H 1.09000 * 109.73216 * 172.03574 * 4 2 1
26 26 H 1.09003 * 109.30120 * 290.43981 * 5 4 2
27 27 H 1.09002 * 109.13232 * 170.96339 * 5 4 2
28 28 H 0.96998 * 120.00035 * 180.02562 * 10 9 7
29 29 H 1.08998 * 109.54280 * 222.64871 * 17 15 6
30 30 H 1.09002 * 109.20344 * 102.93852 * 17 15 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0457 1.4404 0.0000
4 6 2.0464 -0.7334 1.2438
5 6 1.3752 -2.1054 1.3171
6 7 1.5028 -2.8044 0.0446
7 6 1.3261 -4.1639 0.0378
8 1 1.7348 -4.7576 -0.7666
9 6 0.6259 -4.7787 1.0686
10 7 -0.1629 -4.0677 1.8426
11 14 0.8061 -6.6159 1.3543
12 1 1.9240 -6.8625 2.3001
13 1 -0.4543 -7.1538 1.9266
14 1 1.0916 -7.2919 0.0633
15 6 1.7860 -2.2052 -1.1126
16 8 1.8319 -2.8860 -2.1154
17 6 2.0453 -0.7319 -1.2418
18 1 -0.3633 0.5057 0.8946
19 1 -0.3634 0.5218 -0.8853
20 1 -0.3633 -1.0276 -0.0093
21 1 3.1357 1.4361 -0.0093
22 1 1.6770 1.9585 -0.8852
23 1 1.6921 1.9530 0.8947
24 1 1.8003 -0.1577 2.1361
25 1 3.1270 -0.8581 1.1754
26 1 0.3188 -1.9775 1.5536
27 1 1.8511 -2.6944 2.1012
28 1 -0.6514 -4.4967 2.5624
29 1 1.5358 -0.3481 -2.1257
30 1 3.1176 -0.5640 -1.3421
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306738435.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:20
Heat of formation + Delta-G solvation = -42.209271 kcal
Electronic energy + Delta-G solvation = -13323.444651 eV
Core-core repulsion = 11118.431830 eV
Total energy + Delta-G solvation = -2205.012822 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 197.116 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.54916 -36.17989 -34.58136 -31.43895 -28.81589 -27.81026 -26.87016 -24.41960
-22.64763 -19.66659 -17.97976 -16.38324 -15.54385 -14.73760 -14.55468 -14.20567
-13.96162 -13.56278 -12.79063 -12.30058 -12.09348 -11.84310 -11.61393 -11.29146
-11.17774 -10.96209 -10.58465 -10.35030 -10.28420 -10.09474 -9.96492 -9.83074
-8.90571 -8.16590 -7.58138 -6.23209 -3.81192 3.20168 3.28810 3.34933
4.03229 4.20769 4.96665 5.14867 5.18505 5.23855 5.35310 5.78492
5.87355 5.93249 6.06900 6.15980 6.20473 6.21388 6.27286 6.50641
6.58292 6.62056 6.67107 6.89724 7.01565 7.43555 7.66214 8.29237
8.56046 9.28199 9.59871 10.10231 10.76489
Molecular weight = 197.12amu
Principal moments of inertia in cm(-1)
A = 0.052795 B = 0.012604 C = 0.011170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 530.225394 B = 2221.068977 C = 2506.069831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.067 4.067
3 C -0.137 4.137
4 C -0.132 4.132
5 C 0.134 3.866
6 N -0.435 5.435
7 C -0.311 4.311
8 H 0.100 0.900
9 C 0.031 3.969
10 N -0.881 5.881
11 Si 0.923 3.077
12 H -0.279 1.279
13 H -0.285 1.285
14 H -0.270 1.270
15 C 0.448 3.552
16 O -0.606 6.606
17 C -0.113 4.113
18 H 0.051 0.949
19 H 0.047 0.953
20 H 0.073 0.927
21 H 0.051 0.949
22 H 0.052 0.948
23 H 0.053 0.947
24 H 0.068 0.932
25 H 0.057 0.943
26 H 0.091 0.909
27 H 0.060 0.940
28 H 0.266 0.734
29 H 0.081 0.919
30 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.141 8.196 2.187 8.749
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.067 4.067
3 C -0.194 4.194
4 C -0.170 4.170
5 C 0.010 3.990
6 N -0.153 5.153
7 C -0.439 4.439
8 H 0.118 0.882
9 C -0.172 4.172
10 N -0.521 5.521
11 Si 0.750 3.250
12 H -0.205 1.205
13 H -0.211 1.211
14 H -0.194 1.194
15 C 0.236 3.764
16 O -0.493 6.493
17 C -0.153 4.153
18 H 0.070 0.930
19 H 0.066 0.934
20 H 0.092 0.908
21 H 0.070 0.930
22 H 0.071 0.929
23 H 0.072 0.928
24 H 0.087 0.913
25 H 0.076 0.924
26 H 0.109 0.891
27 H 0.078 0.922
28 H 0.076 0.924
29 H 0.099 0.901
30 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 2.030 7.846 1.892 8.322
hybrid contribution 0.031 -0.788 0.388 0.879
sum 2.061 7.058 2.280 7.698
Atomic orbital electron populations
1.21927 0.94170 1.03378 1.00590 1.20620 0.96229 0.94559 0.95315
1.21849 1.00563 0.95689 1.01302 1.22141 1.00108 0.97664 0.97131
1.21316 1.02156 0.89167 0.86367 1.43078 1.59471 1.07522 1.05192
1.19745 1.32941 0.81750 1.09498 0.88217 1.25278 0.94752 1.00145
0.97046 1.70004 1.25668 1.36447 1.19950 0.85977 0.77502 0.82800
0.78763 1.20481 1.21070 1.19408 1.19489 0.84238 0.88980 0.83670
1.90517 1.58191 1.64970 1.35635 1.21585 1.01655 0.93889 0.98207
0.92983 0.93408 0.90819 0.92954 0.92923 0.92829 0.91347 0.92430
0.89121 0.92169 0.92377 0.90078 0.90588
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.46 7.82 37.16 0.29 -2.17 16
2 C -0.07 -1.12 0.79 -154.29 -0.12 -1.24 16
3 C -0.14 -1.78 8.49 37.16 0.32 -1.47 16
4 C -0.13 -2.34 4.95 -26.60 -0.13 -2.47 16
5 C 0.13 3.02 3.93 -4.49 -0.02 3.01 16
6 N -0.43 -11.41 2.76 -116.01 -0.32 -11.73 16
7 C -0.31 -8.94 9.06 -14.93 -0.14 -9.08 16
8 H 0.10 3.04 7.20 -52.48 -0.38 2.66 16
9 C 0.03 0.82 4.96 -17.47 -0.09 0.74 16
10 N -0.88 -23.66 10.61 55.50 0.59 -23.07 16
11 Si 0.92 21.16 29.59 -169.99 -5.03 16.13 16
12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16
13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
15 C 0.45 11.49 6.86 -11.88 -0.08 11.41 16
16 O -0.61 -18.04 16.31 5.54 0.09 -17.95 16
17 C -0.11 -2.20 4.79 -28.11 -0.13 -2.34 16
18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
20 H 0.07 1.55 5.92 -51.93 -0.31 1.24 16
21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
25 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16
26 H 0.09 2.18 5.55 -51.93 -0.29 1.89 16
27 H 0.06 1.44 7.54 -51.93 -0.39 1.04 16
28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16
29 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16
30 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16
LS Contribution 239.96 15.07 3.62 3.62
Total: -1.00 -31.08 239.96 -5.46 -36.54
By element:
Atomic # 1 Polarization: 4.39 SS G_CDS: -4.30 Total: 0.09 kcal
Atomic # 6 Polarization: -3.52 SS G_CDS: -0.10 Total: -3.62 kcal
Atomic # 7 Polarization: -35.08 SS G_CDS: 0.27 Total: -34.81 kcal
Atomic # 8 Polarization: -18.04 SS G_CDS: 0.09 Total: -17.95 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal
Total LS contribution 3.62 Total: 3.62 kcal
Total: -31.08 -5.46 -36.54 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306738435.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.668 kcal
(2) G-P(sol) polarization free energy of solvation -31.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds