Wall clock time and date at job start Mon Mar 30 2020 02:38:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.69817 * 2 1
4 4 C 1.53348 * 109.67560 * 120.52377 * 2 1 3
5 5 C 1.52911 * 108.67511 * 52.20069 * 4 2 1
6 6 N 1.45751 * 110.49170 * 50.75108 * 5 4 2
7 7 C 1.37096 * 117.94674 * 160.91995 * 6 5 4
8 8 H 1.08008 * 120.00198 * 201.32093 * 7 6 5
9 9 C 1.38952 * 120.00179 * 21.05585 * 7 6 5
10 10 N 1.31409 * 119.99931 * 18.28154 * 9 7 6
11 11 Si 1.86801 * 120.00013 * 198.28959 * 9 7 6
12 12 H 1.48494 * 109.47326 * 89.99893 * 11 9 7
13 13 H 1.48508 * 109.46779 * 209.99466 * 11 9 7
14 14 H 1.48494 * 109.47141 * 329.99187 * 11 9 7
15 15 C 1.33356 * 124.10586 * 341.20683 * 6 5 4
16 16 O 1.21294 * 118.24458 * 181.93583 * 15 6 5
17 17 C 1.50156 * 123.51944 * 1.66587 * 15 6 5
18 18 H 1.08997 * 109.46769 * 299.47628 * 1 2 3
19 19 H 1.08997 * 109.47426 * 59.48197 * 1 2 3
20 20 H 1.09000 * 109.47083 * 179.48267 * 1 2 3
21 21 H 1.08999 * 109.46762 * 180.51906 * 3 2 1
22 22 H 1.08995 * 109.47806 * 300.51817 * 3 2 1
23 23 H 1.09004 * 109.47113 * 60.52578 * 3 2 1
24 24 H 1.09003 * 109.59709 * 292.44380 * 4 2 1
25 25 H 1.09000 * 109.73216 * 172.03574 * 4 2 1
26 26 H 1.09003 * 109.30120 * 290.43981 * 5 4 2
27 27 H 1.09002 * 109.13232 * 170.96339 * 5 4 2
28 28 H 0.96998 * 120.00035 * 180.02562 * 10 9 7
29 29 H 1.08998 * 109.54280 * 222.64871 * 17 15 6
30 30 H 1.09002 * 109.20344 * 102.93852 * 17 15 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0457 1.4404 0.0000
4 6 2.0464 -0.7334 1.2438
5 6 1.3752 -2.1054 1.3171
6 7 1.5028 -2.8044 0.0446
7 6 1.3261 -4.1639 0.0378
8 1 1.7348 -4.7576 -0.7666
9 6 0.6259 -4.7787 1.0686
10 7 -0.1629 -4.0677 1.8426
11 14 0.8061 -6.6159 1.3543
12 1 1.9240 -6.8625 2.3001
13 1 -0.4543 -7.1538 1.9266
14 1 1.0916 -7.2919 0.0633
15 6 1.7860 -2.2052 -1.1126
16 8 1.8319 -2.8860 -2.1154
17 6 2.0453 -0.7319 -1.2418
18 1 -0.3633 0.5057 0.8946
19 1 -0.3634 0.5218 -0.8853
20 1 -0.3633 -1.0276 -0.0093
21 1 3.1357 1.4361 -0.0093
22 1 1.6770 1.9585 -0.8852
23 1 1.6921 1.9530 0.8947
24 1 1.8003 -0.1577 2.1361
25 1 3.1270 -0.8581 1.1754
26 1 0.3188 -1.9775 1.5536
27 1 1.8511 -2.6944 2.1012
28 1 -0.6514 -4.4967 2.5624
29 1 1.5358 -0.3481 -2.1257
30 1 3.1176 -0.5640 -1.3421
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306738435.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:19
Heat of formation + Delta-G solvation = -62.507701 kcal
Electronic energy + Delta-G solvation = -13324.324857 eV
Core-core repulsion = 11118.431830 eV
Total energy + Delta-G solvation = -2205.893027 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 197.116 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-41.33798 -37.91632 -36.55120 -33.46908 -30.52187 -29.39867 -28.12330 -26.38281
-24.33380 -21.38210 -19.80893 -18.18451 -17.47499 -16.63193 -16.38485 -15.99617
-15.52728 -15.07679 -14.48485 -14.06150 -13.60879 -13.36888 -13.09601 -12.91981
-12.72000 -12.59164 -12.35817 -12.16767 -11.99066 -11.71019 -11.49523 -11.32567
-10.89666 -10.18583 -9.66610 -8.31024 -5.99849 1.34747 1.38346 1.51045
2.05810 2.27904 3.06949 3.14855 3.78781 3.88697 3.93966 4.18713
4.51702 4.58599 4.73225 4.81995 4.88270 4.94918 5.04159 5.07585
5.16975 5.22242 5.35509 5.38296 5.48404 5.55420 5.67632 6.14717
6.48358 7.16788 7.58099 8.07632 8.65646
Molecular weight = 197.12amu
Principal moments of inertia in cm(-1)
A = 0.052795 B = 0.012604 C = 0.011170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 530.225394 B = 2221.068977 C = 2506.069831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.061 4.061
3 C -0.128 4.128
4 C -0.124 4.124
5 C 0.138 3.862
6 N -0.443 5.443
7 C -0.358 4.358
8 H 0.067 0.933
9 C 0.001 3.999
10 N -0.890 5.890
11 Si 0.987 3.013
12 H -0.264 1.264
13 H -0.271 1.271
14 H -0.278 1.278
15 C 0.430 3.570
16 O -0.662 6.662
17 C -0.105 4.105
18 H 0.074 0.926
19 H 0.062 0.938
20 H 0.024 0.976
21 H 0.064 0.936
22 H 0.065 0.935
23 H 0.073 0.927
24 H 0.101 0.899
25 H 0.065 0.935
26 H 0.074 0.926
27 H 0.039 0.961
28 H 0.274 0.726
29 H 0.090 0.910
30 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.461 9.925 3.451 10.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.061 4.061
3 C -0.185 4.185
4 C -0.162 4.162
5 C 0.015 3.985
6 N -0.160 5.160
7 C -0.486 4.486
8 H 0.085 0.915
9 C -0.201 4.201
10 N -0.528 5.528
11 Si 0.810 3.190
12 H -0.189 1.189
13 H -0.196 1.196
14 H -0.203 1.203
15 C 0.220 3.780
16 O -0.553 6.553
17 C -0.145 4.145
18 H 0.092 0.908
19 H 0.081 0.919
20 H 0.043 0.957
21 H 0.083 0.917
22 H 0.084 0.916
23 H 0.092 0.908
24 H 0.119 0.881
25 H 0.084 0.916
26 H 0.092 0.908
27 H 0.058 0.942
28 H 0.084 0.916
29 H 0.108 0.892
30 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 2.343 9.610 3.198 10.395
hybrid contribution -0.135 -1.362 0.002 1.369
sum 2.208 8.247 3.201 9.118
Atomic orbital electron populations
1.21891 0.94706 1.00687 1.02486 1.20631 0.95739 0.96761 0.93000
1.21769 1.01352 0.92317 1.03031 1.22123 1.00037 0.94778 0.99268
1.21280 1.01560 0.91468 0.84180 1.43340 1.58809 1.07084 1.06723
1.19670 1.35344 0.83429 1.10147 0.91495 1.26045 0.93632 1.04474
0.95981 1.70087 1.24945 1.38067 1.19678 0.85042 0.78319 0.77257
0.78365 1.18885 1.19574 1.20347 1.20681 0.83039 0.91571 0.82669
1.90465 1.60484 1.67000 1.37349 1.21585 1.03263 0.89322 1.00297
0.90754 0.91910 0.95686 0.91682 0.91600 0.90807 0.88060 0.91615
0.90840 0.94218 0.91633 0.89199 0.88468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.55 7.82 71.98 0.56 -3.99 16
2 C -0.06 -1.87 0.79 -52.04 -0.04 -1.91 16
3 C -0.13 -2.68 8.49 71.98 0.61 -2.07 16
4 C -0.12 -4.10 4.95 30.68 0.15 -3.94 16
5 C 0.14 6.29 3.93 86.49 0.34 6.63 16
6 N -0.44 -24.03 2.76 -640.13 -1.77 -25.80 16
7 C -0.36 -21.49 9.06 84.04 0.76 -20.73 16
8 H 0.07 4.36 7.20 -2.91 -0.02 4.34 16
9 C 0.00 0.05 4.96 84.93 0.42 0.47 16
10 N -0.89 -48.21 10.61 21.66 0.23 -47.98 16
11 Si 0.99 43.84 29.59 68.60 2.03 45.87 16
12 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16
13 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16
14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
15 C 0.43 22.68 6.86 87.71 0.60 23.28 16
16 O -0.66 -41.29 16.31 -3.07 -0.05 -41.34 16
17 C -0.10 -3.94 4.79 29.70 0.14 -3.80 16
18 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
19 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
20 H 0.02 1.04 5.92 -2.39 -0.01 1.02 16
21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
24 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16
25 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16
26 H 0.07 3.59 5.55 -2.39 -0.01 3.58 16
27 H 0.04 1.92 7.54 -2.39 -0.02 1.90 16
28 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16
29 H 0.09 3.21 8.11 -2.39 -0.02 3.19 16
30 H 0.10 3.25 8.10 -2.39 -0.02 3.23 16
Total: -1.00 -70.88 239.96 5.10 -65.78
By element:
Atomic # 1 Polarization: 8.41 SS G_CDS: 1.11 Total: 9.52 kcal
Atomic # 6 Polarization: -9.61 SS G_CDS: 3.55 Total: -6.06 kcal
Atomic # 7 Polarization: -72.24 SS G_CDS: -1.54 Total: -73.77 kcal
Atomic # 8 Polarization: -41.29 SS G_CDS: -0.05 Total: -41.34 kcal
Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal
Total: -70.88 5.10 -65.78 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306738435.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.267 kcal
(2) G-P(sol) polarization free energy of solvation -70.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.611 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds