Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36814 * 120.00129 * 2 1 4 4 H 1.07994 * 120.00199 * 215.13629 * 3 2 1 5 5 C 1.39077 * 119.99828 * 35.13697 * 3 2 1 6 6 N 1.31344 * 120.00017 * 5.16908 * 5 3 2 7 7 Si 1.86800 * 119.99973 * 185.17044 * 5 3 2 8 8 H 1.48504 * 109.46908 * 59.99870 * 7 5 3 9 9 H 1.48498 * 109.47125 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46950 * 300.00314 * 7 5 3 11 11 C 1.34771 * 120.00241 * 179.97438 * 2 1 3 12 12 O 1.21646 * 120.00230 * 5.60563 * 11 2 1 13 13 C 1.47331 * 120.00526 * 185.61017 * 11 2 1 14 14 C 1.33497 * 123.42680 * 175.11206 * 13 11 2 15 15 C 1.51930 * 107.11826 * 180.46680 * 14 13 11 16 16 C 1.54804 * 101.83898 * 15.34850 * 15 14 13 17 17 O 1.35584 * 123.43246 * 355.13258 * 13 11 2 18 18 H 1.09001 * 109.46947 * 265.00014 * 1 2 3 19 19 H 1.08995 * 109.46936 * 25.00113 * 1 2 3 20 20 H 1.08997 * 109.47134 * 145.00378 * 1 2 3 21 21 H 0.96994 * 119.99971 * 179.97438 * 6 5 3 22 22 H 1.07999 * 126.46401 * 0.45020 * 14 13 11 23 23 H 1.08999 * 110.96257 * 257.20210 * 15 14 13 24 24 H 1.08994 * 110.95851 * 133.49379 * 15 14 13 25 25 H 1.08994 * 110.91577 * 93.92020 * 16 15 14 26 26 H 1.09004 * 110.91145 * 217.54473 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.0814 1.2701 -0.5383 5 6 1.6438 2.2795 0.6932 6 7 0.5645 2.1489 1.4303 7 14 2.4999 3.9356 0.5759 8 1 2.5178 4.3844 -0.8396 9 1 1.7686 4.9305 1.4009 10 1 3.8936 3.8086 1.0726 11 6 2.1389 -1.1671 0.0005 12 8 1.5351 -2.2182 -0.1019 13 6 3.6069 -1.1702 0.1253 14 6 4.3339 -2.2851 0.2282 15 6 5.7880 -1.8614 0.3479 16 6 5.6535 -0.3575 0.6895 17 8 4.3571 -0.0410 0.1476 18 1 -0.3633 -0.0896 1.0238 19 1 -0.3633 0.9313 -0.4343 20 1 -0.3633 -0.8418 -0.5894 21 1 0.2123 2.9123 1.9141 22 1 3.9592 -3.2980 0.2270 23 1 6.3139 -2.0012 -0.5966 24 1 6.2864 -2.4011 1.1530 25 1 5.6735 -0.2002 1.7679 26 1 6.4334 0.2243 0.1982 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306785410.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -39.075890 kcal Electronic energy + Delta-G solvation = -12766.238264 eV Core-core repulsion = 10425.528222 eV Total energy + Delta-G solvation = -2340.710042 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.01308 -37.89703 -34.84998 -31.71554 -31.32827 -29.29311 -26.35967 -24.71138 -22.32139 -20.63825 -18.97058 -17.78890 -15.95874 -15.69879 -15.11624 -14.43763 -14.24512 -13.81535 -13.08045 -12.42322 -12.05697 -11.79066 -11.64788 -11.30734 -11.26109 -11.07097 -10.80407 -10.72227 -10.42575 -10.24821 -9.10435 -8.72532 -7.74165 -7.53929 -6.40395 -4.02945 2.25821 3.17490 3.19966 3.23023 4.01414 4.15197 4.35317 4.75804 5.10267 5.31238 5.36230 5.50441 5.84862 6.02983 6.15886 6.36723 6.45358 6.76912 6.92763 7.06060 7.26476 7.52187 7.79782 7.85452 8.43879 9.03751 9.42629 9.83140 10.63506 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.016128 C = 0.011395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.949161 B = 1735.668209 C = 2456.653070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.419 5.419 3 C -0.322 4.322 4 H 0.112 0.888 5 C 0.040 3.960 6 N -0.868 5.868 7 Si 0.928 3.072 8 H -0.272 1.272 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.498 3.502 12 O -0.600 6.600 13 C 0.077 3.923 14 C -0.263 4.263 15 C -0.115 4.115 16 C 0.030 3.970 17 O -0.277 6.277 18 H 0.055 0.945 19 H 0.066 0.934 20 H 0.038 0.962 21 H 0.271 0.729 22 H 0.147 0.853 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -0.602 -0.796 7.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.134 5.134 3 C -0.450 4.450 4 H 0.130 0.870 5 C -0.166 4.166 6 N -0.505 5.505 7 Si 0.754 3.246 8 H -0.197 1.197 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.287 3.713 12 O -0.489 6.489 13 C 0.028 3.972 14 C -0.286 4.286 15 C -0.152 4.152 16 C -0.045 4.045 17 O -0.190 6.190 18 H 0.073 0.927 19 H 0.085 0.915 20 H 0.056 0.944 21 H 0.082 0.918 22 H 0.164 0.836 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.659 -0.670 -0.789 6.739 hybrid contribution 0.575 0.822 0.239 1.031 sum 7.234 0.152 -0.550 7.257 Atomic orbital electron populations 1.21357 0.80374 0.99719 1.01017 1.43530 1.05901 1.04884 1.59037 1.19960 1.06988 0.87035 1.31051 0.87038 1.25574 0.96277 1.00609 0.94188 1.69922 1.21400 1.31878 1.27314 0.85980 0.79493 0.80638 0.78497 1.19685 1.20928 1.19479 1.17665 0.84556 0.84302 0.84758 1.90654 1.67977 1.31635 1.58602 1.21612 0.92087 0.86085 0.97387 1.23991 0.92886 0.98551 1.13148 1.22004 0.95910 0.95563 1.01766 1.23888 0.86246 0.95132 0.99247 1.87356 1.23286 1.30464 1.77918 0.92666 0.91510 0.94368 0.91847 0.83579 0.90695 0.90593 0.91319 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.99 8.71 59.85 0.52 3.51 15 2 N -0.42 -11.36 2.97 -123.47 -0.37 -11.72 15 3 C -0.32 -8.62 8.04 -15.02 -0.12 -8.74 15 4 H 0.11 2.94 5.67 -52.49 -0.30 2.64 15 5 C 0.04 1.03 5.18 -17.45 -0.09 0.94 15 6 N -0.87 -23.29 11.16 55.50 0.62 -22.67 15 7 Si 0.93 20.02 29.56 -169.99 -5.02 15.00 15 8 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 9 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 11 C 0.50 13.32 7.61 -12.56 -0.10 13.22 15 12 O -0.60 -16.89 16.37 5.24 0.09 -16.80 15 13 C 0.08 1.79 6.55 -37.54 -0.25 1.54 15 14 C -0.26 -5.20 10.68 -35.36 -0.38 -5.58 15 15 C -0.12 -1.76 7.13 -26.32 -0.19 -1.95 15 16 C 0.03 0.50 8.09 38.11 0.31 0.81 15 17 O -0.28 -6.11 7.64 -18.45 -0.14 -6.25 15 18 H 0.05 1.44 7.73 -51.93 -0.40 1.03 15 19 H 0.07 1.66 7.30 -51.93 -0.38 1.28 15 20 H 0.04 0.91 7.50 -51.93 -0.39 0.52 15 21 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 22 H 0.15 2.81 8.05 -52.49 -0.42 2.39 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 LS Contribution 228.13 15.07 3.44 3.44 Total: -1.00 -30.21 228.13 -4.39 -34.60 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -2.72 Total: 0.66 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.29 Total: 3.75 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.25 Total: -34.39 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.21 -4.39 -34.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306785410.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.474 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds