Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36814 * 120.00129 * 2 1 4 4 H 1.07994 * 120.00199 * 215.13629 * 3 2 1 5 5 C 1.39077 * 119.99828 * 35.13697 * 3 2 1 6 6 N 1.31344 * 120.00017 * 5.16908 * 5 3 2 7 7 Si 1.86800 * 119.99973 * 185.17044 * 5 3 2 8 8 H 1.48504 * 109.46908 * 59.99870 * 7 5 3 9 9 H 1.48498 * 109.47125 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46950 * 300.00314 * 7 5 3 11 11 C 1.34771 * 120.00241 * 179.97438 * 2 1 3 12 12 O 1.21646 * 120.00230 * 5.60563 * 11 2 1 13 13 C 1.47331 * 120.00526 * 185.61017 * 11 2 1 14 14 C 1.33497 * 123.42680 * 175.11206 * 13 11 2 15 15 C 1.51930 * 107.11826 * 180.46680 * 14 13 11 16 16 C 1.54804 * 101.83898 * 15.34850 * 15 14 13 17 17 O 1.35584 * 123.43246 * 355.13258 * 13 11 2 18 18 H 1.09001 * 109.46947 * 265.00014 * 1 2 3 19 19 H 1.08995 * 109.46936 * 25.00113 * 1 2 3 20 20 H 1.08997 * 109.47134 * 145.00378 * 1 2 3 21 21 H 0.96994 * 119.99971 * 179.97438 * 6 5 3 22 22 H 1.07999 * 126.46401 * 0.45020 * 14 13 11 23 23 H 1.08999 * 110.96257 * 257.20210 * 15 14 13 24 24 H 1.08994 * 110.95851 * 133.49379 * 15 14 13 25 25 H 1.08994 * 110.91577 * 93.92020 * 16 15 14 26 26 H 1.09004 * 110.91145 * 217.54473 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.0814 1.2701 -0.5383 5 6 1.6438 2.2795 0.6932 6 7 0.5645 2.1489 1.4303 7 14 2.4999 3.9356 0.5759 8 1 2.5178 4.3844 -0.8396 9 1 1.7686 4.9305 1.4009 10 1 3.8936 3.8086 1.0726 11 6 2.1389 -1.1671 0.0005 12 8 1.5351 -2.2182 -0.1019 13 6 3.6069 -1.1702 0.1253 14 6 4.3339 -2.2851 0.2282 15 6 5.7880 -1.8614 0.3479 16 6 5.6535 -0.3575 0.6895 17 8 4.3571 -0.0410 0.1476 18 1 -0.3633 -0.0896 1.0238 19 1 -0.3633 0.9313 -0.4343 20 1 -0.3633 -0.8418 -0.5894 21 1 0.2123 2.9123 1.9141 22 1 3.9592 -3.2980 0.2270 23 1 6.3139 -2.0012 -0.5966 24 1 6.2864 -2.4011 1.1530 25 1 5.6735 -0.2002 1.7679 26 1 6.4334 0.2243 0.1982 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306785410.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -59.248578 kcal Electronic energy + Delta-G solvation = -12767.113018 eV Core-core repulsion = 10425.528222 eV Total energy + Delta-G solvation = -2341.584796 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.61366 -39.82485 -36.87958 -33.56996 -32.95520 -30.88152 -28.30747 -26.67317 -23.77919 -22.30905 -20.83101 -19.59045 -17.83857 -17.24761 -16.76391 -16.32181 -16.04505 -15.77525 -14.89112 -13.81737 -13.77588 -13.65248 -13.25207 -13.09910 -13.03200 -12.71354 -12.51336 -12.17013 -12.11954 -12.02867 -11.06776 -10.73870 -9.72706 -9.17407 -8.36157 -6.07501 0.53034 1.45474 1.49803 1.57094 2.24795 2.40688 2.54816 3.05792 3.18605 3.82105 4.08265 4.31709 4.40907 4.61286 4.72502 4.83087 4.87306 5.05301 5.12413 5.17148 5.41647 5.56202 5.80377 6.26290 6.45809 7.04189 7.42034 7.81567 8.68899 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.016128 C = 0.011395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.949161 B = 1735.668209 C = 2456.653070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.436 5.436 3 C -0.341 4.341 4 H 0.114 0.886 5 C -0.003 4.003 6 N -0.900 5.900 7 Si 0.997 3.003 8 H -0.264 1.264 9 H -0.280 1.280 10 H -0.263 1.263 11 C 0.483 3.517 12 O -0.629 6.629 13 C 0.030 3.970 14 C -0.228 4.228 15 C -0.105 4.105 16 C 0.022 3.978 17 O -0.305 6.305 18 H 0.040 0.960 19 H 0.064 0.936 20 H 0.043 0.957 21 H 0.275 0.725 22 H 0.148 0.852 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -0.214 -0.810 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.150 5.150 3 C -0.469 4.469 4 H 0.131 0.869 5 C -0.206 4.206 6 N -0.537 5.537 7 Si 0.819 3.181 8 H -0.188 1.188 9 H -0.205 1.205 10 H -0.187 1.187 11 C 0.274 3.726 12 O -0.520 6.520 13 C -0.018 4.018 14 C -0.251 4.251 15 C -0.142 4.142 16 C -0.053 4.053 17 O -0.219 6.219 18 H 0.058 0.942 19 H 0.083 0.917 20 H 0.062 0.938 21 H 0.084 0.916 22 H 0.166 0.834 23 H 0.120 0.880 24 H 0.128 0.872 25 H 0.091 0.909 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.118 -0.288 -0.804 9.158 hybrid contribution -0.126 0.561 0.253 0.628 sum 8.992 0.273 -0.551 9.013 Atomic orbital electron populations 1.21209 0.80463 0.99724 1.00070 1.43786 1.06308 1.05490 1.59452 1.20195 1.07485 0.87267 1.31922 0.86922 1.26480 0.96762 1.03975 0.93394 1.70031 1.22625 1.33021 1.28019 0.84937 0.78482 0.75845 0.78811 1.18819 1.20462 1.18709 1.18304 0.86602 0.83779 0.83900 1.90599 1.69340 1.32313 1.59798 1.21260 0.90722 0.87827 1.01957 1.24522 0.95501 0.97643 1.07406 1.22118 0.92904 0.94769 1.04389 1.24262 0.84537 0.96557 0.99928 1.87249 1.25387 1.30427 1.78855 0.94156 0.91718 0.93820 0.91590 0.83401 0.88022 0.87188 0.90858 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.72 8.71 127.77 1.11 7.83 15 2 N -0.44 -24.23 2.97 -662.79 -1.97 -26.20 15 3 C -0.34 -18.45 8.04 84.12 0.68 -17.77 15 4 H 0.11 5.97 5.67 -2.91 -0.02 5.95 15 5 C 0.00 -0.17 5.18 84.97 0.44 0.27 15 6 N -0.90 -48.84 11.16 21.68 0.24 -48.60 15 7 Si 1.00 40.48 29.56 68.60 2.03 42.51 15 8 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 9 H -0.28 -11.04 7.11 99.48 0.71 -10.33 15 10 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 11 C 0.48 26.38 7.61 86.64 0.66 27.03 15 12 O -0.63 -36.25 16.37 -4.18 -0.07 -36.32 15 13 C 0.03 1.39 6.55 23.59 0.15 1.54 15 14 C -0.23 -8.50 10.68 25.01 0.27 -8.24 15 15 C -0.11 -2.74 7.13 30.86 0.22 -2.52 15 16 C 0.02 0.63 8.09 72.60 0.59 1.22 15 17 O -0.30 -13.05 7.64 -88.93 -0.68 -13.73 15 18 H 0.04 2.18 7.73 -2.39 -0.02 2.16 15 19 H 0.06 3.32 7.30 -2.39 -0.02 3.31 15 20 H 0.04 2.17 7.50 -2.39 -0.02 2.15 15 21 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 22 H 0.15 5.40 8.05 -2.91 -0.02 5.37 15 23 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.11 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.12 2.81 8.14 -2.39 -0.02 2.79 15 Total: -1.00 -65.95 228.13 4.85 -61.10 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.18 Total: 11.87 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.12 Total: 9.37 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.72 Total: -74.80 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.75 Total: -50.05 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -65.95 4.85 -61.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306785410.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.847 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds