Wall clock time and date at job start Mon Mar 30 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48500 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47214 * 300.00432 * 3 2 1 6 6 H 1.48508 * 109.47014 * 60.00462 * 3 2 1 7 7 C 1.38816 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00125 * 163.37070 * 7 2 1 9 9 N 1.36934 * 120.00189 * 343.37211 * 7 2 1 10 10 C 1.45771 * 117.48847 * 333.11378 * 9 7 2 11 11 C 1.53191 * 109.04680 * 216.94767 * 10 9 7 12 12 C 1.52873 * 108.13007 * 304.73035 * 11 10 9 13 13 C 1.52928 * 110.15515 * 66.97843 * 12 11 10 14 14 H 1.09011 * 110.27474 * 69.79683 * 13 12 11 15 15 O 1.44208 * 107.33059 * 189.99740 * 13 12 11 16 16 C 1.43644 * 110.07487 * 117.37911 * 15 13 12 17 17 C 1.55189 * 105.36305 * 338.56239 * 16 15 13 18 18 C 1.44382 * 117.12672 * 153.58685 * 9 7 2 19 19 H 1.08992 * 109.59862 * 32.56333 * 18 9 7 20 20 H 0.96989 * 120.00075 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.54202 * 97.08285 * 10 9 7 22 22 H 1.09000 * 109.60994 * 336.85761 * 10 9 7 23 23 H 1.08996 * 109.73122 * 185.06960 * 11 10 9 24 24 H 1.08999 * 109.76679 * 64.41361 * 11 10 9 25 25 H 1.09003 * 109.35548 * 306.77134 * 12 11 10 26 26 H 1.08999 * 109.24432 * 187.12310 * 12 11 10 27 27 H 1.09003 * 110.26308 * 97.53289 * 16 15 13 28 28 H 1.08989 * 110.26759 * 219.58682 * 16 15 13 29 29 H 1.09003 * 111.26528 * 278.16963 * 17 16 15 30 30 H 1.09006 * 111.26379 * 153.65098 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0565 -1.2216 -0.2682 9 7 1.3686 -2.3634 0.3383 10 6 0.2203 -2.2620 1.2304 11 6 0.2156 -3.4656 2.1781 12 6 0.2414 -4.7380 1.3313 13 6 1.5762 -4.8533 0.5939 14 1 2.3802 -5.0645 1.2991 15 8 1.4496 -5.9292 -0.3579 16 6 1.6016 -5.4255 -1.6945 17 6 1.2902 -3.9081 -1.5999 18 6 1.8943 -3.5906 -0.2115 19 1 2.9756 -3.5085 -0.3211 20 1 -0.4850 0.8399 0.0004 21 1 -0.6981 -2.2567 0.6434 22 1 0.2877 -1.3416 1.8104 23 1 -0.6864 -3.4488 2.7898 24 1 1.0960 -3.4328 2.8200 25 1 -0.5708 -4.7051 0.6050 26 1 0.1109 -5.6041 1.9801 27 1 2.6230 -5.5803 -2.0424 28 1 0.8954 -5.9148 -2.3651 29 1 0.2160 -3.7233 -1.6154 30 1 1.7964 -3.3507 -2.3882 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307231864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:23 Heat of formation + Delta-G solvation = -29.758130 kcal Electronic energy + Delta-G solvation = -13352.698558 eV Core-core repulsion = 11148.225659 eV Total energy + Delta-G solvation = -2204.472900 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38550 -35.87966 -32.91689 -31.54000 -29.31824 -28.50916 -24.94882 -22.38316 -21.83931 -21.32390 -18.41421 -16.84469 -15.67624 -15.28608 -14.80710 -14.24616 -13.83552 -13.41331 -12.69214 -12.58147 -12.32162 -11.88122 -11.39276 -11.02980 -10.90436 -10.71950 -10.50866 -10.20267 -10.10215 -9.86956 -9.85923 -9.30515 -8.94240 -8.46555 -6.73577 -5.80853 -3.27271 3.34717 3.42933 3.45117 4.32000 4.48130 5.26347 5.35058 5.47129 5.53498 5.58094 5.73112 5.82813 5.94172 5.96178 6.16632 6.32164 6.45718 6.51188 6.63112 6.70685 6.78788 6.84999 7.01594 7.39910 7.53068 7.70685 7.80487 8.43884 9.22551 9.88074 10.26070 11.25021 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.012619 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.921285 B = 2218.363854 C = 2526.857551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.578 5.578 10 C 0.189 3.811 11 C -0.145 4.145 12 C -0.117 4.117 13 C 0.075 3.925 14 H 0.075 0.925 15 O -0.393 6.393 16 C 0.048 3.952 17 C -0.173 4.173 18 C 0.168 3.832 19 H 0.053 0.947 20 H 0.254 0.746 21 H 0.031 0.969 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -6.808 0.600 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.299 5.299 10 C 0.064 3.936 11 C -0.183 4.183 12 C -0.155 4.155 13 C 0.017 3.983 14 H 0.093 0.907 15 O -0.312 6.312 16 C -0.029 4.029 17 C -0.213 4.213 18 C 0.058 3.942 19 H 0.071 0.929 20 H 0.064 0.936 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.339 -6.902 0.686 7.065 hybrid contribution 0.400 1.122 -0.233 1.214 sum 1.739 -5.780 0.453 6.053 Atomic orbital electron populations 1.70096 1.05233 1.25442 1.53736 1.25031 0.95273 0.98391 1.00482 0.86230 0.79400 0.83888 0.77291 1.20224 1.21708 1.21494 1.19309 0.92782 0.84955 1.42674 0.91584 1.43066 1.33876 1.01035 1.51913 1.20536 0.89403 0.93991 0.89638 1.22100 1.00595 0.96942 0.98704 1.21655 0.97313 0.97684 0.98845 1.22840 0.97211 0.87421 0.90848 0.90672 1.88529 1.93833 1.33343 1.15503 1.23280 0.99685 0.95253 0.84658 1.23823 1.02631 0.93516 1.01373 1.20786 0.96945 0.86486 0.89996 0.92880 0.93635 0.95053 0.91461 0.92411 0.92653 0.91930 0.93038 0.92993 0.91136 0.90927 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.02 55.49 0.61 -25.16 16 2 C 0.01 0.20 4.81 -17.43 -0.08 0.12 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.27 -7.24 9.33 -15.06 -0.14 -7.38 16 8 H 0.07 1.77 7.78 -52.48 -0.41 1.36 16 9 N -0.58 -14.36 2.87 -166.56 -0.48 -14.84 16 10 C 0.19 4.54 4.75 -4.34 -0.02 4.52 16 11 C -0.14 -2.80 6.11 -26.70 -0.16 -2.97 16 12 C -0.12 -2.18 5.42 -26.83 -0.15 -2.33 16 13 C 0.07 1.44 3.80 -26.71 -0.10 1.34 16 14 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 15 O -0.39 -7.42 10.94 -35.23 -0.39 -7.80 16 16 C 0.05 0.82 7.78 38.32 0.30 1.11 16 17 C -0.17 -3.43 6.90 -24.67 -0.17 -3.60 16 18 C 0.17 3.60 2.86 -68.10 -0.19 3.41 16 19 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 20 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.03 0.82 7.78 -51.93 -0.40 0.42 16 22 H 0.07 1.77 6.69 -51.93 -0.35 1.42 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 239.19 15.07 3.60 3.60 Total: -1.00 -28.55 239.19 -6.91 -35.45 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.51 Total: -1.91 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.72 Total: -5.78 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.13 Total: -40.00 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.39 Total: -7.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.55 -6.91 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307231864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds