Wall clock time and date at job start Mon Mar 30 2020 02:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48500 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47214 * 300.00432 * 3 2 1 6 6 H 1.48508 * 109.47014 * 60.00462 * 3 2 1 7 7 C 1.38816 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00125 * 163.37070 * 7 2 1 9 9 N 1.36934 * 120.00189 * 343.37211 * 7 2 1 10 10 C 1.45771 * 117.48847 * 333.11378 * 9 7 2 11 11 C 1.53191 * 109.04680 * 216.94767 * 10 9 7 12 12 C 1.52873 * 108.13007 * 304.73035 * 11 10 9 13 13 C 1.52928 * 110.15515 * 66.97843 * 12 11 10 14 14 H 1.09011 * 110.27474 * 69.79683 * 13 12 11 15 15 O 1.44208 * 107.33059 * 189.99740 * 13 12 11 16 16 C 1.43644 * 110.07487 * 117.37911 * 15 13 12 17 17 C 1.55189 * 105.36305 * 338.56239 * 16 15 13 18 18 C 1.44382 * 117.12672 * 153.58685 * 9 7 2 19 19 H 1.08992 * 109.59862 * 32.56333 * 18 9 7 20 20 H 0.96989 * 120.00075 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.54202 * 97.08285 * 10 9 7 22 22 H 1.09000 * 109.60994 * 336.85761 * 10 9 7 23 23 H 1.08996 * 109.73122 * 185.06960 * 11 10 9 24 24 H 1.08999 * 109.76679 * 64.41361 * 11 10 9 25 25 H 1.09003 * 109.35548 * 306.77134 * 12 11 10 26 26 H 1.08999 * 109.24432 * 187.12310 * 12 11 10 27 27 H 1.09003 * 110.26308 * 97.53289 * 16 15 13 28 28 H 1.08989 * 110.26759 * 219.58682 * 16 15 13 29 29 H 1.09003 * 111.26528 * 278.16963 * 17 16 15 30 30 H 1.09006 * 111.26379 * 153.65098 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0565 -1.2216 -0.2682 9 7 1.3686 -2.3634 0.3383 10 6 0.2203 -2.2620 1.2304 11 6 0.2156 -3.4656 2.1781 12 6 0.2414 -4.7380 1.3313 13 6 1.5762 -4.8533 0.5939 14 1 2.3802 -5.0645 1.2991 15 8 1.4496 -5.9292 -0.3579 16 6 1.6016 -5.4255 -1.6945 17 6 1.2902 -3.9081 -1.5999 18 6 1.8943 -3.5906 -0.2115 19 1 2.9756 -3.5085 -0.3211 20 1 -0.4850 0.8399 0.0004 21 1 -0.6981 -2.2567 0.6434 22 1 0.2877 -1.3416 1.8104 23 1 -0.6864 -3.4488 2.7898 24 1 1.0960 -3.4328 2.8200 25 1 -0.5708 -4.7051 0.6050 26 1 0.1109 -5.6041 1.9801 27 1 2.6230 -5.5803 -2.0424 28 1 0.8954 -5.9148 -2.3651 29 1 0.2160 -3.7233 -1.6154 30 1 1.7964 -3.3507 -2.3882 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307231864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:22 Heat of formation + Delta-G solvation = -47.601206 kcal Electronic energy + Delta-G solvation = -13353.472292 eV Core-core repulsion = 11148.225659 eV Total energy + Delta-G solvation = -2205.246633 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.96698 -37.62437 -34.69045 -33.33300 -31.12133 -30.09836 -26.87011 -24.16407 -23.49824 -22.86785 -20.14020 -18.73952 -17.25402 -17.07778 -16.42725 -15.98975 -15.58236 -15.12930 -14.31085 -14.26646 -14.09035 -13.53360 -13.14757 -12.83295 -12.76504 -12.28922 -12.20128 -12.05824 -11.85777 -11.72644 -11.50389 -11.01871 -10.52858 -10.38954 -8.74372 -7.88123 -5.37804 1.44892 1.47304 1.57528 2.48068 2.86725 3.25037 3.59571 3.86135 3.97691 4.06118 4.24177 4.27632 4.38689 4.45545 4.61665 4.84879 4.85432 4.97057 5.05174 5.12267 5.17658 5.29193 5.35059 5.46318 5.66472 5.78413 6.06354 6.37378 7.16510 7.92610 8.22817 9.15703 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.012619 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.921285 B = 2218.363854 C = 2526.857551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.277 4.277 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.197 3.803 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.080 3.920 14 H 0.092 0.908 15 O -0.397 6.397 16 C 0.056 3.944 17 C -0.170 4.170 18 C 0.154 3.846 19 H 0.053 0.947 20 H 0.250 0.750 21 H -0.002 1.002 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -8.058 0.881 8.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.407 4.407 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.072 3.928 11 C -0.171 4.171 12 C -0.150 4.150 13 C 0.022 3.978 14 H 0.109 0.891 15 O -0.317 6.317 16 C -0.020 4.020 17 C -0.210 4.210 18 C 0.045 3.955 19 H 0.071 0.929 20 H 0.059 0.941 21 H 0.016 0.984 22 H 0.055 0.945 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.318 -8.183 0.961 8.560 hybrid contribution 0.111 1.485 -0.362 1.533 sum 2.429 -6.698 0.599 7.150 Atomic orbital electron populations 1.70252 1.06607 1.25793 1.55137 1.25766 0.96007 1.01399 1.00784 0.85235 0.78672 0.79897 0.76792 1.19087 1.21964 1.21565 1.19608 0.92977 0.86151 1.41957 0.91597 1.43260 1.33780 1.01687 1.52561 1.20277 0.87900 0.94949 0.89656 1.21959 1.02117 0.95035 0.97949 1.21621 0.96511 0.98146 0.98764 1.22799 0.98006 0.86110 0.90919 0.89051 1.88515 1.94043 1.33011 1.16093 1.23371 1.01740 0.92619 0.84304 1.23680 1.00746 0.96228 1.00384 1.20996 0.96777 0.86423 0.91273 0.92933 0.94078 0.98393 0.94538 0.90212 0.91772 0.93415 0.90082 0.90651 0.88907 0.93443 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 11.02 21.65 0.24 -54.59 16 2 C -0.04 -2.42 4.81 84.86 0.41 -2.01 16 3 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.28 -15.11 9.33 84.03 0.78 -14.32 16 8 H 0.07 3.53 7.78 -2.91 -0.02 3.50 16 9 N -0.59 -29.58 2.87 -680.87 -1.95 -31.54 16 10 C 0.20 9.63 4.75 86.58 0.41 10.04 16 11 C -0.13 -4.93 6.11 30.62 0.19 -4.74 16 12 C -0.11 -3.94 5.42 30.53 0.17 -3.77 16 13 C 0.08 2.87 3.80 30.61 0.12 2.98 16 14 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 15 O -0.40 -13.78 10.94 -148.98 -1.63 -15.41 16 16 C 0.06 1.74 7.78 72.73 0.57 2.31 16 17 C -0.17 -6.63 6.90 31.93 0.22 -6.41 16 18 C 0.15 6.48 2.86 46.01 0.13 6.61 16 19 H 0.05 2.20 7.89 -2.39 -0.02 2.18 16 20 H 0.25 14.22 8.31 -92.72 -0.77 13.45 16 21 H 0.00 -0.11 7.78 -2.39 -0.02 -0.12 16 22 H 0.04 1.97 6.69 -2.39 -0.02 1.95 16 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -61.08 239.19 2.77 -58.31 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.10 Total: 5.92 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 2.99 Total: -9.31 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.71 Total: -86.13 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -1.63 Total: -15.41 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.08 2.77 -58.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307231864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.709 kcal (2) G-P(sol) polarization free energy of solvation -61.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds