Wall clock time and date at job start Mon Mar 30 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2 11 11 C 1.48555 * 111.00357 * 54.58083 * 10 9 7 12 12 C 1.54379 * 104.59945 * 159.04028 * 11 10 9 13 13 H 1.08990 * 118.16212 * 115.84830 * 12 11 10 14 14 C 1.53001 * 118.12525 * 272.76989 * 12 11 10 15 15 H 1.09000 * 117.41059 * 344.00251 * 14 12 11 16 16 C 1.52999 * 117.44237 * 199.31079 * 14 12 11 17 17 O 1.42903 * 109.47104 * 115.77270 * 16 14 12 18 18 C 1.53003 * 60.54931 * 91.66377 * 14 12 11 19 19 H 1.08994 * 119.52834 * 113.28775 * 18 14 12 20 20 C 1.48562 * 110.99772 * 169.99418 * 10 9 7 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 23 23 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 24 24 H 1.09003 * 110.41023 * 277.81324 * 11 10 9 25 25 H 1.08998 * 110.41601 * 40.25776 * 11 10 9 26 26 H 1.09002 * 109.47247 * 235.76929 * 16 14 12 27 27 H 1.08988 * 109.47397 * 355.77022 * 16 14 12 28 28 H 0.96702 * 114.00326 * 179.97438 * 17 16 14 29 29 H 1.09000 * 110.41676 * 319.74030 * 20 10 9 30 30 H 1.09004 * 110.40941 * 82.06054 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 3.1626 -3.4990 1.1276 12 6 3.7084 -4.9296 1.3246 13 1 4.7695 -5.1043 1.1475 14 6 2.9300 -5.8792 2.2375 15 1 2.1922 -5.4384 2.9079 16 6 3.6747 -7.0977 2.7867 17 8 3.7678 -6.9978 4.2092 18 6 2.6234 -5.8567 0.7387 19 1 2.8536 -6.7311 0.1301 20 6 1.5135 -4.9081 0.2371 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5574 0.8881 23 1 0.6247 -2.5564 -0.8919 24 1 3.9720 -2.8154 0.8714 25 1 2.6488 -3.1610 2.0275 26 1 3.1323 -8.0051 2.5209 27 1 4.6763 -7.1347 2.3587 28 1 4.2288 -7.7386 4.6262 29 1 0.7415 -4.7906 0.9976 30 1 1.0793 -5.2844 -0.6892 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307365509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:02 Heat of formation + Delta-G solvation = -19.604840 kcal Electronic energy + Delta-G solvation = -12438.354165 eV Core-core repulsion = 10234.321545 eV Total energy + Delta-G solvation = -2204.032620 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.58424 -36.76804 -34.41462 -32.29892 -28.07224 -27.84200 -25.51366 -23.07053 -20.72993 -20.13466 -19.84398 -17.38046 -16.60053 -15.83727 -14.91231 -14.18611 -13.95698 -13.67315 -13.38980 -12.88549 -12.26015 -12.08853 -11.45018 -11.29128 -11.00606 -10.88294 -10.69648 -10.42164 -10.24269 -10.06841 -9.61837 -9.48878 -8.59654 -8.40587 -7.48410 -6.38200 -4.07392 3.44904 3.47338 3.65536 3.66447 4.07799 4.53137 4.83181 4.92359 4.99902 5.22968 5.36682 5.38871 5.47733 5.50547 5.58102 5.67801 6.04220 6.17534 6.31039 6.41633 6.57892 6.63920 6.92037 7.10484 7.51185 7.58845 7.93054 8.26642 8.54298 8.85033 9.63973 11.01448 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058714 B = 0.007650 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.774760 B = 3659.113191 C = 3867.714538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.057 0.943 9 C 0.170 3.830 10 N -0.503 5.503 11 C 0.080 3.920 12 C -0.152 4.152 13 H 0.111 0.889 14 C -0.135 4.135 15 H 0.106 0.894 16 C 0.112 3.888 17 O -0.571 6.571 18 C -0.154 4.154 19 H 0.112 0.888 20 C 0.057 3.943 21 H 0.267 0.733 22 H -0.017 1.017 23 H 0.024 0.976 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.377 0.623 29 H 0.036 0.964 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 -12.969 4.191 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.633 4.633 8 H 0.075 0.925 9 C 0.044 3.956 10 N -0.228 5.228 11 C -0.047 4.047 12 C -0.171 4.171 13 H 0.129 0.871 14 C -0.153 4.153 15 H 0.124 0.876 16 C 0.034 3.966 17 O -0.376 6.376 18 C -0.173 4.173 19 H 0.130 0.870 20 C -0.071 4.071 21 H 0.077 0.923 22 H 0.001 0.999 23 H 0.042 0.958 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.055 0.945 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.617 -10.711 3.523 13.073 hybrid contribution 0.025 -2.277 0.777 2.406 sum 6.641 -12.988 4.299 15.208 Atomic orbital electron populations 1.70795 1.06895 1.30426 1.46748 1.25878 0.96490 1.02780 0.93741 0.83489 0.74820 0.75057 0.76577 1.20766 1.21436 1.21310 1.21998 0.94766 0.91049 1.55480 0.92451 1.20007 0.91225 0.89265 0.95064 1.65551 1.15553 1.01475 1.40175 1.22379 0.96738 0.92417 0.93209 1.23759 0.96792 0.93450 1.03127 0.87091 1.22353 1.02244 0.98072 0.92641 0.87634 1.21593 0.98190 0.96077 0.80730 1.86519 1.81190 1.49877 1.19989 1.23422 0.99619 1.00592 0.93661 0.87009 1.22643 0.94181 0.90989 0.99323 0.92297 0.99921 0.95801 0.89826 0.94029 0.93262 0.93429 0.77631 0.94536 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.65 55.43 0.76 -27.55 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.59 -17.29 8.58 -34.44 -0.30 -17.58 16 8 H 0.06 1.65 6.64 -52.49 -0.35 1.30 16 9 C 0.17 4.60 4.13 -4.97 -0.02 4.58 16 10 N -0.50 -11.54 5.48 -231.41 -1.27 -12.81 16 11 C 0.08 1.69 5.34 -2.19 -0.01 1.68 16 12 C -0.15 -2.54 6.74 -89.23 -0.60 -3.14 16 13 H 0.11 1.64 8.12 -51.93 -0.42 1.22 16 14 C -0.13 -2.03 5.60 -90.62 -0.51 -2.54 16 15 H 0.11 1.80 8.14 -51.93 -0.42 1.37 16 16 C 0.11 1.30 7.32 37.16 0.27 1.57 16 17 O -0.57 -6.87 13.66 -35.23 -0.48 -7.35 16 18 C -0.15 -2.41 6.84 -89.23 -0.61 -3.02 16 19 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 20 C 0.06 1.08 6.29 -2.18 -0.01 1.06 16 21 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 22 H -0.02 -0.47 7.74 -51.93 -0.40 -0.88 16 23 H 0.02 0.68 8.01 -51.93 -0.42 0.26 16 24 H 0.08 1.80 7.21 -51.93 -0.37 1.43 16 25 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.49 7.94 -51.94 -0.41 0.08 16 28 H 0.38 2.46 9.12 45.56 0.42 2.87 16 29 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 250.70 15.07 3.78 3.78 Total: -1.00 -32.78 250.70 -7.75 -40.53 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.56 Total: -0.15 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.89 Total: -17.06 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.51 Total: -40.37 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.48 Total: -7.35 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.78 -7.75 -40.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307365509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.924 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds