Wall clock time and date at job start Mon Mar 30 2020 02:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99464 * 2 1 4 4 H 1.48503 * 109.46686 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47294 * 299.99464 * 3 2 1 6 6 H 1.48492 * 109.47473 * 60.00141 * 3 2 1 7 7 C 1.38811 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00082 * 180.02562 * 9 7 2 11 11 H 1.08997 * 115.55360 * 9.32441 * 10 9 7 12 12 C 1.53004 * 117.51957 * 223.62876 * 10 9 7 13 13 C 1.53003 * 60.00073 * 252.51907 * 12 10 9 14 14 H 1.09000 * 117.51534 * 252.51893 * 13 12 10 15 15 C 1.52998 * 117.50172 * 107.48707 * 13 12 10 16 16 H 1.08998 * 109.87222 * 237.38695 * 15 13 12 17 17 C 1.54096 * 109.87660 * 116.37654 * 15 13 12 18 18 C 1.54817 * 104.18822 * 238.54762 * 17 15 13 19 19 C 1.54991 * 102.09285 * 339.11830 * 18 17 15 20 20 O 1.43749 * 109.87535 * 358.54623 * 15 13 12 21 21 H 0.96999 * 120.00636 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99604 * 359.97438 * 9 7 2 23 23 H 1.08998 * 117.50261 * 145.02564 * 12 10 9 24 24 H 1.09005 * 117.49609 * 0.02562 * 12 10 9 25 25 H 1.09004 * 110.48850 * 119.87028 * 17 15 13 26 26 H 1.08996 * 110.48992 * 357.22609 * 17 15 13 27 27 H 1.08996 * 110.90849 * 97.31959 * 18 17 15 28 28 H 1.09004 * 110.90250 * 220.92384 * 18 17 15 29 29 H 1.09000 * 110.62043 * 155.51925 * 19 18 17 30 30 H 1.08998 * 110.62229 * 278.52472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 3.1336 -3.5785 0.1618 12 6 1.5619 -4.7605 -0.9345 13 6 1.3459 -4.8833 0.5752 14 1 1.9525 -5.6119 1.1131 15 6 -0.0772 -4.6911 1.1033 16 1 -0.0946 -3.8848 1.8364 17 6 -0.5772 -5.9977 1.7493 18 6 -1.8532 -6.3532 0.9478 19 6 -2.2401 -4.9855 0.3299 20 8 -0.9651 -4.3854 0.0149 21 1 -0.4851 0.8400 -0.0004 22 1 0.3557 -2.3880 0.0005 23 1 2.3107 -5.4084 -1.3902 24 1 0.6903 -4.5426 -1.5518 25 1 -0.8192 -5.8356 2.7997 26 1 0.1699 -6.7846 1.6460 27 1 -1.6326 -7.0834 0.1692 28 1 -2.6391 -6.7174 1.6095 29 1 -2.8318 -5.1265 -0.5746 30 1 -2.7824 -4.3770 1.0536 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:04 Heat of formation + Delta-G solvation = -13.781906 kcal Electronic energy + Delta-G solvation = -12768.493624 eV Core-core repulsion = 10564.713506 eV Total energy + Delta-G solvation = -2203.780118 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22163 -36.26638 -33.01188 -31.72328 -29.76210 -28.39856 -23.75127 -23.07183 -21.19859 -20.47696 -19.30180 -17.26224 -15.94686 -15.58598 -14.84952 -14.36620 -14.07133 -13.46373 -13.26984 -12.61715 -11.92680 -11.60572 -11.24473 -11.10547 -10.86528 -10.85291 -10.77800 -10.43952 -10.14177 -10.07457 -9.75404 -9.36633 -8.93851 -8.62518 -6.77412 -5.74801 -3.02062 3.44641 3.50083 3.52810 4.30931 4.59523 4.74692 4.90895 5.07243 5.26107 5.39104 5.58031 5.59759 5.67910 5.85499 5.94440 5.98987 6.04500 6.09858 6.21276 6.33946 6.37026 6.56266 6.65025 6.82371 7.17108 7.50049 7.73528 8.44281 9.55359 10.15776 10.52298 11.46830 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052800 B = 0.009449 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.178761 B = 2962.532916 C = 3268.232138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.684 5.684 10 C 0.152 3.848 11 H 0.099 0.901 12 C -0.215 4.215 13 C -0.208 4.208 14 H 0.098 0.902 15 C 0.116 3.884 16 H 0.071 0.929 17 C -0.148 4.148 18 C -0.154 4.154 19 C 0.045 3.955 20 O -0.356 6.356 21 H 0.255 0.745 22 H 0.396 0.604 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -11.687 2.557 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.037 3.963 11 H 0.117 0.883 12 C -0.257 4.257 13 C -0.230 4.230 14 H 0.116 0.884 15 C 0.058 3.942 16 H 0.089 0.911 17 C -0.186 4.186 18 C -0.191 4.191 19 C -0.032 4.032 20 O -0.275 6.275 21 H 0.065 0.935 22 H 0.232 0.768 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.702 -11.319 2.379 11.691 hybrid contribution -0.041 0.581 0.209 0.619 sum -1.743 -10.738 2.587 11.182 Atomic orbital electron populations 1.69713 1.05129 1.25610 1.56891 1.24807 0.95551 0.97839 1.02638 0.86080 0.78803 0.83901 0.77172 1.20447 1.21796 1.21833 1.19377 0.91223 0.83957 1.43280 0.90840 1.42115 1.06446 0.98934 1.84440 1.20960 0.94402 0.82471 0.98422 0.88298 1.23430 1.03880 1.06822 0.91542 1.23057 0.96184 1.06236 0.97517 0.88429 1.21983 0.88971 0.94794 0.88477 0.91080 1.23016 0.97511 0.98522 0.99565 1.23110 0.97616 0.98592 0.99824 1.23465 0.87900 0.91843 0.99966 1.89001 1.20347 1.75720 1.42443 0.93479 0.76782 0.90727 0.88592 0.91304 0.90786 0.90927 0.90996 0.89637 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.25 -7.13 9.98 -15.06 -0.15 -7.28 16 8 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 9 N -0.68 -18.41 5.39 -53.43 -0.29 -18.70 16 10 C 0.15 3.34 6.59 -67.93 -0.45 2.89 16 11 H 0.10 2.04 8.12 -51.93 -0.42 1.62 16 12 C -0.22 -4.20 9.80 -26.73 -0.26 -4.46 16 13 C -0.21 -3.85 5.62 -90.62 -0.51 -4.36 16 14 H 0.10 1.56 7.85 -51.93 -0.41 1.15 16 15 C 0.12 2.12 2.97 -26.16 -0.08 2.04 16 16 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.15 -2.06 6.64 -25.20 -0.17 -2.23 16 18 C -0.15 -1.94 7.15 -24.72 -0.18 -2.11 16 19 C 0.05 0.69 7.72 38.21 0.29 0.98 16 20 O -0.36 -7.11 8.54 -35.23 -0.30 -7.41 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.40 11.36 6.23 -40.82 -0.25 11.10 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.10 2.07 7.03 -51.93 -0.37 1.71 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.95 7.51 -51.93 -0.39 0.56 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 249.71 15.07 3.76 3.76 Total: -1.00 -31.44 249.71 -7.06 -38.50 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.34 Total: 9.19 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.59 Total: -14.98 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.44 Total: -46.76 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.30 Total: -7.41 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.44 -7.06 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.715 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds