Wall clock time and date at job start Mon Mar 30 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 112.85182 * 2 1 4 4 C 1.53782 * 113.61348 * 131.19058 * 2 1 3 5 5 C 1.53780 * 87.08047 * 89.11474 * 4 2 1 6 6 N 1.46499 * 113.61825 * 270.79793 * 5 4 2 7 7 C 1.34774 * 120.00200 * 280.83050 * 6 5 4 8 8 O 1.21683 * 119.99982 * 359.97438 * 7 6 5 9 9 C 1.46372 * 120.00016 * 180.02562 * 7 6 5 10 10 H 1.07998 * 120.00085 * 6.51942 * 9 7 6 11 11 C 1.40048 * 119.99886 * 186.52596 * 9 7 6 12 12 N 1.30675 * 120.00005 * 6.56895 * 11 9 7 13 13 Si 1.86800 * 120.00022 * 186.57056 * 11 9 7 14 14 H 1.48501 * 109.47189 * 84.99048 * 13 11 9 15 15 H 1.48499 * 109.47109 * 204.99107 * 13 11 9 16 16 H 1.48505 * 109.47259 * 324.99057 * 13 11 9 17 17 C 1.53779 * 87.17226 * 25.39240 * 5 4 2 18 18 H 1.09007 * 109.46995 * 294.20667 * 1 2 3 19 19 H 1.08999 * 109.47165 * 54.20617 * 1 2 3 20 20 H 1.08996 * 109.47275 * 174.20821 * 1 2 3 21 21 H 1.09002 * 109.47136 * 191.19811 * 3 2 1 22 22 H 1.08998 * 109.46553 * 311.19389 * 3 2 1 23 23 H 1.08996 * 109.47575 * 71.19064 * 3 2 1 24 24 H 1.09003 * 113.61806 * 334.56907 * 4 2 1 25 25 H 1.08997 * 113.61828 * 203.66441 * 4 2 1 26 26 H 1.09004 * 113.61674 * 139.97736 * 5 4 2 27 27 H 0.97000 * 119.99405 * 100.82877 * 6 5 4 28 28 H 0.96999 * 119.99745 * 180.02562 * 12 11 9 29 29 H 1.08995 * 113.61962 * 89.15399 * 17 5 4 30 30 H 1.09007 * 113.61501 * 220.06235 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9280 1.0604 5 6 2.0929 -2.0425 0.0022 6 7 0.8355 -2.7944 0.0042 7 6 0.6262 -3.7549 0.9262 8 8 1.4818 -3.9980 1.7566 9 6 -0.6299 -4.5065 0.9278 10 1 -1.3440 -4.3664 0.1299 11 6 -0.9056 -5.4071 1.9643 12 7 -0.1048 -5.4832 2.9941 13 14 -2.4182 -6.4995 1.8747 14 1 -2.1016 -7.7199 1.0899 15 1 -2.8310 -6.8870 3.2475 16 1 -3.5245 -5.7602 1.2153 17 6 2.1448 -0.9318 -1.0601 18 1 -0.3633 0.4214 0.9374 19 1 -0.3633 0.6010 -0.8336 20 1 -0.3633 -1.0224 -0.1037 21 1 3.1943 1.3532 -0.1996 22 1 1.6415 2.0075 -0.7733 23 1 1.9600 1.8735 0.9727 24 1 1.4945 -1.1067 1.9158 25 1 3.1590 -0.6485 1.3497 26 1 2.9717 -2.6875 0.0028 27 1 0.1537 -2.6008 -0.6580 28 1 -0.2956 -6.1072 3.7118 29 1 3.1575 -0.6534 -1.3516 30 1 1.4923 -1.1136 -1.9142 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307549869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:01 Heat of formation + Delta-G solvation = -29.010847 kcal Electronic energy + Delta-G solvation = -12786.225615 eV Core-core repulsion = 10581.785120 eV Total energy + Delta-G solvation = -2204.440495 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.57648 -36.44082 -32.65750 -31.86828 -29.42915 -27.07263 -26.07920 -25.26654 -21.62792 -19.48787 -17.83462 -17.12399 -15.38085 -14.93789 -14.60899 -14.01704 -13.69358 -13.42741 -12.58121 -12.33699 -12.16401 -11.98163 -11.47347 -11.32597 -11.03257 -11.00121 -10.57651 -10.53193 -10.34013 -10.18951 -9.73392 -9.52701 -8.81032 -7.54781 -7.38498 -6.18311 -4.60203 3.16290 3.22584 3.25100 4.12586 4.60650 4.79809 4.85450 5.06024 5.28866 5.41930 5.59528 5.86109 5.87572 5.96760 6.02348 6.08866 6.13066 6.22780 6.34464 6.45326 6.64475 6.72793 6.82406 6.96423 7.46064 7.96067 8.18447 8.37728 9.05471 9.58721 10.63639 10.82751 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064364 B = 0.008988 C = 0.008591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.921376 B = 3114.585555 C = 3258.563737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.132 4.132 4 C -0.141 4.141 5 C 0.144 3.856 6 N -0.748 5.748 7 C 0.558 3.442 8 O -0.579 6.579 9 C -0.549 4.549 10 H 0.067 0.933 11 C 0.089 3.911 12 N -0.770 5.770 13 Si 0.907 3.093 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.140 4.140 18 H 0.052 0.948 19 H 0.047 0.953 20 H 0.076 0.924 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.380 0.620 28 H 0.268 0.732 29 H 0.082 0.918 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 8.925 -6.319 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 C -0.190 4.190 4 C -0.180 4.180 5 C 0.037 3.963 6 N -0.404 5.404 7 C 0.362 3.638 8 O -0.462 6.462 9 C -0.586 4.586 10 H 0.085 0.915 11 C -0.130 4.130 12 N -0.399 5.399 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.178 4.178 18 H 0.071 0.929 19 H 0.066 0.934 20 H 0.094 0.906 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.214 0.786 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.132 8.648 -5.515 10.319 hybrid contribution -1.035 -0.386 -0.319 1.150 sum 0.097 8.262 -5.833 10.114 Atomic orbital electron populations 1.21742 0.93310 1.03291 1.00809 1.21817 0.95758 0.93648 0.97577 1.21712 1.00040 0.96080 1.01126 1.23383 1.00259 0.96402 0.97973 1.21271 0.89751 0.90849 0.94414 1.46088 1.16972 1.40406 1.36974 1.18182 0.88180 0.78159 0.79267 1.90589 1.46877 1.68990 1.39739 1.20867 1.03297 1.24617 1.09803 0.91510 1.25678 0.96884 0.96223 0.94230 1.69992 1.34122 1.29958 1.05789 0.86413 0.81943 0.80609 0.77902 1.19660 1.20565 1.19035 1.23395 1.00740 0.96839 0.96789 0.92876 0.93413 0.90556 0.92939 0.93205 0.92930 0.90965 0.90815 0.91537 0.78632 0.92097 0.89951 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.03 37.16 0.34 -1.72 16 2 C -0.09 -1.33 1.39 -153.60 -0.21 -1.55 16 3 C -0.13 -1.65 9.20 37.16 0.34 -1.31 16 4 C -0.14 -2.62 7.02 -25.92 -0.18 -2.80 16 5 C 0.14 2.85 3.95 -67.12 -0.27 2.58 16 6 N -0.75 -16.87 4.11 -54.43 -0.22 -17.09 16 7 C 0.56 15.98 7.70 -12.99 -0.10 15.88 16 8 O -0.58 -18.91 15.11 5.20 0.08 -18.83 16 9 C -0.55 -15.61 9.53 -35.63 -0.34 -15.95 16 10 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 11 C 0.09 2.52 5.49 -17.37 -0.10 2.42 16 12 N -0.77 -23.30 11.90 55.55 0.66 -22.64 16 13 Si 0.91 20.33 29.56 -169.99 -5.03 15.30 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 C -0.14 -2.09 6.95 -25.83 -0.18 -2.27 16 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.08 1.31 4.99 -51.93 -0.26 1.05 16 21 H 0.05 0.60 7.96 -51.93 -0.41 0.19 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.58 8.10 -51.93 -0.42 1.16 16 25 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.38 7.60 7.06 -40.82 -0.29 7.31 16 28 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 29 H 0.08 1.08 7.98 -51.93 -0.41 0.66 16 30 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 LS Contribution 251.37 15.07 3.79 3.79 Total: -1.00 -33.10 251.37 -5.71 -38.82 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.29 Total: 5.36 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.70 Total: -4.71 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.44 Total: -39.73 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.10 -5.71 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307549869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.807 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds