Wall clock time and date at job start Mon Mar 30 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 112.85182 * 2 1 4 4 C 1.53782 * 113.61348 * 131.19058 * 2 1 3 5 5 C 1.53780 * 87.08047 * 89.11474 * 4 2 1 6 6 N 1.46499 * 113.61825 * 270.79793 * 5 4 2 7 7 C 1.34774 * 120.00200 * 280.83050 * 6 5 4 8 8 O 1.21683 * 119.99982 * 359.97438 * 7 6 5 9 9 C 1.46372 * 120.00016 * 180.02562 * 7 6 5 10 10 H 1.07998 * 120.00085 * 6.51942 * 9 7 6 11 11 C 1.40048 * 119.99886 * 186.52596 * 9 7 6 12 12 N 1.30675 * 120.00005 * 6.56895 * 11 9 7 13 13 Si 1.86800 * 120.00022 * 186.57056 * 11 9 7 14 14 H 1.48501 * 109.47189 * 84.99048 * 13 11 9 15 15 H 1.48499 * 109.47109 * 204.99107 * 13 11 9 16 16 H 1.48505 * 109.47259 * 324.99057 * 13 11 9 17 17 C 1.53779 * 87.17226 * 25.39240 * 5 4 2 18 18 H 1.09007 * 109.46995 * 294.20667 * 1 2 3 19 19 H 1.08999 * 109.47165 * 54.20617 * 1 2 3 20 20 H 1.08996 * 109.47275 * 174.20821 * 1 2 3 21 21 H 1.09002 * 109.47136 * 191.19811 * 3 2 1 22 22 H 1.08998 * 109.46553 * 311.19389 * 3 2 1 23 23 H 1.08996 * 109.47575 * 71.19064 * 3 2 1 24 24 H 1.09003 * 113.61806 * 334.56907 * 4 2 1 25 25 H 1.08997 * 113.61828 * 203.66441 * 4 2 1 26 26 H 1.09004 * 113.61674 * 139.97736 * 5 4 2 27 27 H 0.97000 * 119.99405 * 100.82877 * 6 5 4 28 28 H 0.96999 * 119.99745 * 180.02562 * 12 11 9 29 29 H 1.08995 * 113.61962 * 89.15399 * 17 5 4 30 30 H 1.09007 * 113.61501 * 220.06235 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9280 1.0604 5 6 2.0929 -2.0425 0.0022 6 7 0.8355 -2.7944 0.0042 7 6 0.6262 -3.7549 0.9262 8 8 1.4818 -3.9980 1.7566 9 6 -0.6299 -4.5065 0.9278 10 1 -1.3440 -4.3664 0.1299 11 6 -0.9056 -5.4071 1.9643 12 7 -0.1048 -5.4832 2.9941 13 14 -2.4182 -6.4995 1.8747 14 1 -2.1016 -7.7199 1.0899 15 1 -2.8310 -6.8870 3.2475 16 1 -3.5245 -5.7602 1.2153 17 6 2.1448 -0.9318 -1.0601 18 1 -0.3633 0.4214 0.9374 19 1 -0.3633 0.6010 -0.8336 20 1 -0.3633 -1.0224 -0.1037 21 1 3.1943 1.3532 -0.1996 22 1 1.6415 2.0075 -0.7733 23 1 1.9600 1.8735 0.9727 24 1 1.4945 -1.1067 1.9158 25 1 3.1590 -0.6485 1.3497 26 1 2.9717 -2.6875 0.0028 27 1 0.1537 -2.6008 -0.6580 28 1 -0.2956 -6.1072 3.7118 29 1 3.1575 -0.6534 -1.3516 30 1 1.4923 -1.1136 -1.9142 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307549869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:01 Heat of formation + Delta-G solvation = -52.101235 kcal Electronic energy + Delta-G solvation = -12787.226889 eV Core-core repulsion = 10581.785120 eV Total energy + Delta-G solvation = -2205.441769 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.07638 -38.51060 -34.73438 -33.81235 -30.91035 -28.40475 -27.99077 -26.64994 -23.33906 -21.35525 -19.43496 -18.95934 -17.47260 -16.59692 -16.16768 -15.72564 -15.00274 -14.92995 -14.39785 -14.18780 -13.48128 -13.42454 -13.14511 -12.85340 -12.64090 -12.59297 -12.39552 -12.01979 -12.00432 -11.70344 -11.12794 -10.94021 -10.89135 -9.81830 -9.31994 -8.31269 -6.84146 1.39110 1.41724 1.55636 2.24327 2.47926 3.09487 3.54478 3.64497 3.71420 4.00361 4.08798 4.40484 4.66758 4.76707 4.82572 4.89994 4.94415 5.01205 5.06255 5.22281 5.25545 5.31049 5.32136 5.51771 5.63735 5.88627 6.25412 6.38384 6.87197 7.58129 8.51727 8.68590 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064364 B = 0.008988 C = 0.008591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.921376 B = 3114.585555 C = 3258.563737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C -0.127 4.127 4 C -0.147 4.147 5 C 0.119 3.881 6 N -0.733 5.733 7 C 0.542 3.458 8 O -0.633 6.633 9 C -0.577 4.577 10 H 0.087 0.913 11 C 0.029 3.971 12 N -0.825 5.825 13 Si 0.998 3.002 14 H -0.262 1.262 15 H -0.273 1.273 16 H -0.248 1.248 17 C -0.113 4.113 18 H 0.044 0.956 19 H 0.079 0.921 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.394 0.606 28 H 0.274 0.726 29 H 0.111 0.889 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 10.002 -8.254 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.184 4.184 4 C -0.186 4.186 5 C 0.013 3.987 6 N -0.388 5.388 7 C 0.346 3.654 8 O -0.520 6.520 9 C -0.614 4.614 10 H 0.105 0.895 11 C -0.186 4.186 12 N -0.454 5.454 13 Si 0.817 3.183 14 H -0.187 1.187 15 H -0.198 1.198 16 H -0.171 1.171 17 C -0.151 4.151 18 H 0.063 0.937 19 H 0.097 0.903 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.230 0.770 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.004 9.776 -7.504 12.324 hybrid contribution -0.624 -0.681 0.286 0.967 sum -0.628 9.095 -7.218 11.628 Atomic orbital electron populations 1.21746 0.93536 1.02252 1.01754 1.21769 0.95595 0.95048 0.95260 1.21674 1.00889 0.93895 1.01963 1.23429 1.00582 0.97680 0.96948 1.21580 0.87448 0.91466 0.98226 1.45706 1.18317 1.39119 1.35703 1.18564 0.88085 0.79132 0.79609 1.90537 1.48457 1.70886 1.42104 1.21419 1.03774 1.25375 1.10833 0.89519 1.26968 1.00829 0.97574 0.93190 1.70164 1.37013 1.31217 1.07015 0.85040 0.76894 0.78001 0.78379 1.18695 1.19803 1.17110 1.23328 1.02787 0.93156 0.95806 0.93661 0.90256 0.92982 0.91593 0.91005 0.93035 0.95528 0.89423 0.94079 0.76993 0.91588 0.87105 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.03 71.98 0.65 -3.26 16 2 C -0.08 -2.16 1.39 -51.60 -0.07 -2.23 16 3 C -0.13 -2.70 9.20 71.98 0.66 -2.04 16 4 C -0.15 -5.56 7.02 31.12 0.22 -5.34 16 5 C 0.12 4.75 3.95 45.52 0.18 4.93 16 6 N -0.73 -33.75 4.11 -444.33 -1.82 -35.57 16 7 C 0.54 32.22 7.70 86.36 0.66 32.89 16 8 O -0.63 -43.56 15.11 -4.30 -0.06 -43.62 16 9 C -0.58 -33.39 9.53 24.83 0.24 -33.15 16 10 H 0.09 4.48 7.86 -2.91 -0.02 4.46 16 11 C 0.03 1.66 5.49 85.30 0.47 2.13 16 12 N -0.82 -51.58 11.90 21.84 0.26 -51.32 16 13 Si 1.00 41.67 29.56 68.60 2.03 43.70 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 17 C -0.11 -3.08 6.95 31.18 0.22 -2.86 16 18 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 19 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.05 1.74 4.99 -2.39 -0.01 1.73 16 21 H 0.07 1.24 7.96 -2.39 -0.02 1.23 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.03 1.21 8.10 -2.39 -0.02 1.20 16 25 H 0.09 2.98 8.10 -2.39 -0.02 2.96 16 26 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.39 15.71 7.06 -92.71 -0.65 15.05 16 28 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 29 H 0.11 2.45 7.98 -2.39 -0.02 2.43 16 30 H 0.08 2.02 8.07 -2.38 -0.02 2.00 16 Total: -1.00 -75.68 251.37 4.09 -71.58 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.47 Total: 24.15 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 3.22 Total: -8.92 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -1.56 Total: -86.89 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.62 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -75.68 4.09 -71.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307549869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.483 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds