Wall clock time and date at job start Mon Mar 30 2020 02:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 C 1.53002 * 110.43535 * 302.53695 * 3 2 1 5 5 C 1.54634 * 110.48582 * 179.97438 * 3 2 1 6 6 C 1.54488 * 101.76197 * 265.98708 * 5 3 2 7 7 N 1.46767 * 105.47046 * 334.58141 * 6 5 3 8 8 C 1.37105 * 124.34610 * 197.01675 * 7 6 5 9 9 H 1.08008 * 119.99943 * 327.13423 * 8 7 6 10 10 C 1.38946 * 119.99952 * 147.13353 * 8 7 6 11 11 N 1.31410 * 119.99691 * 333.94238 * 10 8 7 12 12 Si 1.86805 * 120.00050 * 153.94484 * 10 8 7 13 13 H 1.48492 * 109.46792 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46986 * 59.99972 * 12 10 8 15 15 H 1.48500 * 109.46704 * 299.99987 * 12 10 8 16 16 C 1.34414 * 111.30343 * 17.28778 * 7 6 5 17 17 O 1.21295 * 124.94351 * 179.30981 * 16 7 6 18 18 H 1.09000 * 109.47407 * 300.00156 * 1 2 3 19 19 H 1.09004 * 109.47174 * 60.00183 * 1 2 3 20 20 H 1.08997 * 109.47621 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47407 * 239.99844 * 2 1 3 22 22 H 1.09002 * 109.46698 * 119.99629 * 2 1 3 23 23 H 1.09000 * 109.47283 * 297.46032 * 4 3 2 24 24 H 1.09001 * 109.46377 * 57.46037 * 4 3 2 25 25 H 1.08997 * 109.46929 * 177.45603 * 4 3 2 26 26 H 1.08996 * 110.97011 * 147.86784 * 5 3 2 27 27 H 1.08997 * 110.99764 * 24.11613 * 5 3 2 28 28 H 1.09001 * 110.23995 * 215.58807 * 6 5 3 29 29 H 1.08998 * 110.24442 * 93.58287 * 6 5 3 30 30 H 0.96990 * 120.00388 * 354.71600 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4910 2.2032 -1.2087 5 6 3.5861 1.4699 0.0006 6 6 3.8984 1.5815 1.5095 7 7 2.7159 2.2115 2.1085 8 6 2.6951 2.7949 3.3491 9 1 3.3135 2.4003 4.1419 10 6 1.8785 3.8937 3.5864 11 7 1.5345 4.6832 2.5938 12 14 1.2697 4.2488 5.3164 13 1 0.4223 5.4681 5.3023 14 1 2.4317 4.4645 6.2155 15 1 0.4718 3.0963 5.8065 16 6 1.6545 2.1377 1.2872 17 8 0.5491 2.5685 1.5400 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8932 -0.5138 0.8901 23 1 1.8535 1.7386 -2.1257 24 1 0.4015 2.1735 -1.1924 25 1 1.8269 3.2394 -1.1690 26 1 3.9611 2.3384 -0.5406 27 1 3.9932 0.5481 -0.4148 28 1 4.7786 2.2049 1.6673 29 1 4.0553 0.5910 1.9365 30 1 1.9113 4.5446 1.7109 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307577129.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:32 Heat of formation + Delta-G solvation = -42.286919 kcal Electronic energy + Delta-G solvation = -13424.903156 eV Core-core repulsion = 11219.886968 eV Total energy + Delta-G solvation = -2205.016189 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.70201 -35.14934 -34.58060 -31.95944 -29.71939 -27.82417 -25.04397 -24.18796 -22.13532 -20.54543 -18.39874 -16.93488 -15.27044 -14.85200 -14.55961 -13.80786 -13.76953 -13.34571 -12.81898 -12.47486 -12.02491 -11.57619 -11.54059 -11.29957 -11.20795 -11.01590 -10.75651 -10.71214 -10.08404 -9.97136 -9.96432 -9.80106 -8.67569 -8.00167 -7.41129 -6.40816 -3.78763 3.42000 3.51968 3.67509 4.14286 4.42837 4.97687 5.06684 5.21699 5.31168 5.36950 5.60583 5.75404 5.83318 5.98376 6.04750 6.12827 6.19676 6.26122 6.34195 6.45670 6.49283 6.56810 6.65957 6.82364 6.91152 7.79239 8.38252 8.79726 9.19087 9.56057 10.24445 10.90428 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046446 B = 0.013592 C = 0.012540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.699886 B = 2059.613930 C = 2232.368078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.096 4.096 4 C -0.124 4.124 5 C -0.126 4.126 6 C 0.094 3.906 7 N -0.457 5.457 8 C -0.432 4.432 9 H 0.075 0.925 10 C 0.026 3.974 11 N -0.833 5.833 12 Si 1.078 2.922 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.286 1.286 16 C 0.460 3.540 17 O -0.539 6.539 18 H 0.071 0.929 19 H 0.054 0.946 20 H 0.043 0.957 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -6.925 -5.325 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.100 4.100 4 C -0.182 4.182 5 C -0.164 4.164 6 C -0.030 4.030 7 N -0.178 5.178 8 C -0.558 4.558 9 H 0.093 0.907 10 C -0.187 4.187 11 N -0.463 5.463 12 Si 0.905 3.095 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.212 1.212 16 C 0.247 3.753 17 O -0.418 6.418 18 H 0.090 0.910 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.749 -5.646 -4.247 7.278 hybrid contribution 1.293 -1.118 -0.976 1.968 sum 3.042 -6.763 -5.223 9.071 Atomic orbital electron populations 1.21851 0.95525 1.00404 1.03434 1.21293 0.96548 0.94214 1.01067 1.21333 0.95151 0.96615 0.96943 1.21643 1.01718 0.99428 0.95378 1.22706 0.95125 1.01913 0.96684 1.21983 0.91318 0.97632 0.92068 1.43793 1.06843 1.51103 1.16100 1.19896 1.33702 1.15798 0.86413 0.90750 1.26200 0.95381 0.91162 1.06007 1.70515 1.39665 1.33173 1.02968 0.83400 0.76399 0.76523 0.73207 1.20586 1.21497 1.21204 1.20057 0.85073 0.83954 0.86257 1.90588 1.22143 1.51001 1.78112 0.91000 0.92743 0.93763 0.92314 0.92260 0.93178 0.91767 0.92905 0.91005 0.90834 0.91989 0.93206 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.28 37.16 0.34 -2.35 16 2 C -0.09 -1.60 4.95 -26.73 -0.13 -1.73 16 3 C -0.10 -1.90 0.64 -154.51 -0.10 -2.00 16 4 C -0.12 -2.24 8.08 37.16 0.30 -1.94 16 5 C -0.13 -2.17 6.23 -25.09 -0.16 -2.33 16 6 C 0.09 1.92 7.25 -3.12 -0.02 1.90 16 7 N -0.46 -12.04 2.82 -113.61 -0.32 -12.36 16 8 C -0.43 -12.51 9.77 -14.93 -0.15 -12.65 16 9 H 0.07 2.08 7.96 -52.48 -0.42 1.66 16 10 C 0.03 0.76 4.56 -17.47 -0.08 0.68 16 11 N -0.83 -26.26 12.17 55.50 0.68 -25.58 16 12 Si 1.08 26.07 29.99 -169.99 -5.10 20.97 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.46 11.99 5.01 -10.86 -0.05 11.94 16 17 O -0.54 -16.30 13.89 5.54 0.08 -16.22 16 18 H 0.07 1.52 6.54 -51.93 -0.34 1.18 16 19 H 0.05 0.89 6.40 -51.93 -0.33 0.56 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.21 6.34 -51.93 -0.33 0.88 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 27 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.27 8.77 7.14 -40.82 -0.29 8.48 16 LS Contribution 243.15 15.07 3.66 3.66 Total: -1.00 -33.88 243.15 -5.33 -39.22 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.29 Total: -1.20 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.05 Total: -8.49 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.36 Total: -37.94 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.08 Total: -16.22 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.10 Total: 20.97 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.88 -5.33 -39.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307577129.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.070 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds