Wall clock time and date at job start Mon Mar 30 2020 02:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 C 1.53002 * 110.43535 * 302.53695 * 3 2 1 5 5 C 1.54634 * 110.48582 * 179.97438 * 3 2 1 6 6 C 1.54488 * 101.76197 * 265.98708 * 5 3 2 7 7 N 1.46767 * 105.47046 * 334.58141 * 6 5 3 8 8 C 1.37105 * 124.34610 * 197.01675 * 7 6 5 9 9 H 1.08008 * 119.99943 * 327.13423 * 8 7 6 10 10 C 1.38946 * 119.99952 * 147.13353 * 8 7 6 11 11 N 1.31410 * 119.99691 * 333.94238 * 10 8 7 12 12 Si 1.86805 * 120.00050 * 153.94484 * 10 8 7 13 13 H 1.48492 * 109.46792 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46986 * 59.99972 * 12 10 8 15 15 H 1.48500 * 109.46704 * 299.99987 * 12 10 8 16 16 C 1.34414 * 111.30343 * 17.28778 * 7 6 5 17 17 O 1.21295 * 124.94351 * 179.30981 * 16 7 6 18 18 H 1.09000 * 109.47407 * 300.00156 * 1 2 3 19 19 H 1.09004 * 109.47174 * 60.00183 * 1 2 3 20 20 H 1.08997 * 109.47621 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47407 * 239.99844 * 2 1 3 22 22 H 1.09002 * 109.46698 * 119.99629 * 2 1 3 23 23 H 1.09000 * 109.47283 * 297.46032 * 4 3 2 24 24 H 1.09001 * 109.46377 * 57.46037 * 4 3 2 25 25 H 1.08997 * 109.46929 * 177.45603 * 4 3 2 26 26 H 1.08996 * 110.97011 * 147.86784 * 5 3 2 27 27 H 1.08997 * 110.99764 * 24.11613 * 5 3 2 28 28 H 1.09001 * 110.23995 * 215.58807 * 6 5 3 29 29 H 1.08998 * 110.24442 * 93.58287 * 6 5 3 30 30 H 0.96990 * 120.00388 * 354.71600 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4910 2.2032 -1.2087 5 6 3.5861 1.4699 0.0006 6 6 3.8984 1.5815 1.5095 7 7 2.7159 2.2115 2.1085 8 6 2.6951 2.7949 3.3491 9 1 3.3135 2.4003 4.1419 10 6 1.8785 3.8937 3.5864 11 7 1.5345 4.6832 2.5938 12 14 1.2697 4.2488 5.3164 13 1 0.4223 5.4681 5.3023 14 1 2.4317 4.4645 6.2155 15 1 0.4718 3.0963 5.8065 16 6 1.6545 2.1377 1.2872 17 8 0.5491 2.5685 1.5400 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8932 -0.5138 0.8901 23 1 1.8535 1.7386 -2.1257 24 1 0.4015 2.1735 -1.1924 25 1 1.8269 3.2394 -1.1690 26 1 3.9611 2.3384 -0.5406 27 1 3.9932 0.5481 -0.4148 28 1 4.7786 2.2049 1.6673 29 1 4.0553 0.5910 1.9365 30 1 1.9113 4.5446 1.7109 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307577129.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:32 Heat of formation + Delta-G solvation = -65.302245 kcal Electronic energy + Delta-G solvation = -13425.901176 eV Core-core repulsion = 11219.886968 eV Total energy + Delta-G solvation = -2206.014208 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48028 -36.99638 -36.49899 -33.93015 -31.32590 -29.42752 -26.94114 -25.94748 -23.64070 -22.33356 -20.24666 -18.92828 -16.97100 -16.71056 -16.34704 -15.70706 -15.27576 -15.06233 -14.51425 -14.18690 -13.63503 -13.37797 -13.06201 -12.98164 -12.78997 -12.62807 -12.42227 -12.20091 -11.98407 -11.93559 -11.42375 -11.37863 -10.76645 -9.99443 -9.53472 -8.68668 -6.04923 1.46274 1.58118 1.76150 2.20303 2.47333 3.08595 3.25936 3.56751 3.69007 3.88017 4.18636 4.30934 4.43469 4.52965 4.69928 4.71129 4.76383 4.82972 4.98384 5.01093 5.08649 5.14629 5.24320 5.40552 5.49234 5.60916 6.08416 6.73014 7.11496 7.43909 8.19810 8.61498 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046446 B = 0.013592 C = 0.012540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.699886 B = 2059.613930 C = 2232.368078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.086 3.914 7 N -0.484 5.484 8 C -0.449 4.449 9 H 0.078 0.922 10 C -0.026 4.026 11 N -0.867 5.867 12 Si 1.122 2.878 13 H -0.286 1.286 14 H -0.252 1.252 15 H -0.283 1.283 16 C 0.444 3.556 17 O -0.594 6.594 18 H 0.021 0.979 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.108 0.892 22 H 0.052 0.948 23 H 0.098 0.902 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -8.889 -6.430 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 C -0.096 4.096 4 C -0.177 4.177 5 C -0.148 4.148 6 C -0.037 4.037 7 N -0.205 5.205 8 C -0.576 4.576 9 H 0.095 0.905 10 C -0.232 4.232 11 N -0.499 5.499 12 Si 0.943 3.057 13 H -0.212 1.212 14 H -0.176 1.176 15 H -0.209 1.209 16 C 0.233 3.767 17 O -0.478 6.478 18 H 0.040 0.960 19 H 0.080 0.920 20 H 0.091 0.909 21 H 0.126 0.874 22 H 0.071 0.929 23 H 0.117 0.883 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.158 -7.634 -5.359 9.847 hybrid contribution 0.888 -0.594 -0.652 1.251 sum 4.046 -8.228 -6.010 10.963 Atomic orbital electron populations 1.21816 0.96314 1.01577 1.01324 1.21360 0.95869 0.92427 1.03052 1.21395 0.97163 0.97570 0.93504 1.21638 1.00837 0.98507 0.96765 1.22762 0.92925 1.04812 0.94323 1.22258 0.89163 0.97931 0.94343 1.44191 1.09245 1.51196 1.15897 1.20216 1.33510 1.15581 0.88264 0.90468 1.27708 0.95350 0.91281 1.08867 1.70652 1.41721 1.34870 1.02684 0.82873 0.77103 0.76054 0.69698 1.21159 1.17644 1.20902 1.21295 0.84223 0.82847 0.88369 1.90533 1.24458 1.53005 1.79790 0.96010 0.91992 0.90887 0.87375 0.92938 0.88339 0.93289 0.95085 0.90396 0.85764 0.91788 0.91240 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.28 71.98 0.67 -4.41 16 2 C -0.09 -2.73 4.95 30.59 0.15 -2.58 16 3 C -0.09 -3.43 0.64 -52.18 -0.03 -3.47 16 4 C -0.12 -4.09 8.08 71.98 0.58 -3.51 16 5 C -0.11 -3.37 6.23 31.66 0.20 -3.17 16 6 C 0.09 3.33 7.25 86.83 0.63 3.96 16 7 N -0.48 -25.67 2.82 -631.93 -1.78 -27.45 16 8 C -0.45 -26.45 9.77 84.04 0.82 -25.63 16 9 H 0.08 4.35 7.96 -2.91 -0.02 4.32 16 10 C -0.03 -1.58 4.56 84.93 0.39 -1.19 16 11 N -0.87 -56.88 12.17 21.66 0.26 -56.62 16 12 Si 1.12 53.40 29.99 68.60 2.06 55.46 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 14 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 C 0.44 23.48 5.01 87.90 0.44 23.92 16 17 O -0.59 -37.58 13.89 -3.08 -0.04 -37.62 16 18 H 0.02 0.91 6.54 -2.39 -0.02 0.90 16 19 H 0.06 1.93 6.40 -2.38 -0.02 1.91 16 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.05 1.80 6.34 -2.39 -0.02 1.78 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 2.30 7.91 -2.39 -0.02 2.28 16 27 H 0.12 2.60 7.90 -2.39 -0.02 2.58 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.25 17.14 7.14 -92.72 -0.66 16.48 16 Total: -1.00 -78.60 243.15 5.56 -73.04 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.22 Total: 9.26 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.84 Total: -16.08 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.52 Total: -84.07 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.04 Total: -37.62 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.06 Total: 55.46 kcal Total: -78.60 5.56 -73.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307577129.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.740 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds