Wall clock time and date at job start Mon Mar 30 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47077 * 270.00245 * 3 2 1 5 5 H 1.48494 * 109.46783 * 30.00477 * 3 2 1 6 6 H 1.48504 * 109.46764 * 150.00333 * 3 2 1 7 7 C 1.38816 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00108 * 195.89131 * 7 2 1 9 9 N 1.36939 * 119.99743 * 15.88595 * 7 2 1 10 10 C 1.47655 * 118.29038 * 26.61452 * 9 7 2 11 11 C 1.54158 * 111.44996 * 138.08345 * 10 9 7 12 12 O 1.40459 * 111.02701 * 319.57123 * 11 10 9 13 13 C 1.42940 * 113.43534 * 94.85069 * 12 11 10 14 14 C 1.48154 * 113.24800 * 276.80969 * 13 12 11 15 15 C 1.53161 * 120.27216 * 202.98860 * 14 13 12 16 16 C 1.52955 * 60.08257 * 109.39929 * 15 14 13 17 17 C 1.44547 * 118.29337 * 206.62976 * 9 7 2 18 18 H 0.97001 * 120.00330 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.07362 * 258.56747 * 10 9 7 20 20 H 1.08995 * 109.07871 * 17.59254 * 10 9 7 21 21 H 1.09007 * 109.16977 * 80.03225 * 11 10 9 22 22 H 1.09004 * 109.16995 * 199.24618 * 11 10 9 23 23 H 1.08994 * 108.72746 * 155.83701 * 13 12 11 24 24 H 1.09003 * 108.72892 * 37.78374 * 13 12 11 25 25 H 1.09006 * 117.49414 * 216.91025 * 15 14 13 26 26 H 1.08997 * 117.49386 * 1.88480 * 15 14 13 27 27 H 1.08992 * 117.49214 * 252.50339 * 16 15 14 28 28 H 1.09004 * 117.49614 * 107.50026 * 16 15 14 29 29 H 1.09004 * 109.74438 * 25.61920 * 17 9 7 30 30 H 1.08995 * 109.74969 * 146.28988 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0593 -1.2201 0.2555 9 7 1.3648 -2.3653 -0.3257 10 6 0.1856 -2.2873 -1.2108 11 6 0.1907 -3.4189 -2.2577 12 8 1.4847 -3.6361 -2.7588 13 6 2.1893 -4.6788 -2.0810 14 6 2.8413 -4.2266 -0.8299 15 6 4.0319 -5.0008 -0.2563 16 6 4.2470 -3.6178 -0.8733 17 6 1.8732 -3.6054 0.2158 18 1 -0.4851 0.8400 0.0004 19 1 -0.7187 -2.3647 -0.6071 20 1 0.1890 -1.3263 -1.7251 21 1 -0.1735 -4.3363 -1.7950 22 1 -0.4700 -3.1477 -3.0812 23 1 2.9526 -5.0772 -2.7493 24 1 1.4869 -5.4771 -1.8409 25 1 4.1024 -5.0844 0.8283 26 1 4.3890 -5.8637 -0.8184 27 1 4.7454 -3.5709 -1.8415 28 1 4.4588 -2.7914 -0.1948 29 1 2.4101 -3.4092 1.1439 30 1 1.0469 -4.2902 0.4061 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307616133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:35 Heat of formation + Delta-G solvation = 8.568137 kcal Electronic energy + Delta-G solvation = -13342.584649 eV Core-core repulsion = 11139.773701 eV Total energy + Delta-G solvation = -2202.810948 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93111 -36.06902 -34.74642 -31.04902 -28.96634 -26.66297 -25.58041 -23.18855 -21.81322 -20.18248 -18.73012 -16.86793 -15.60408 -15.37532 -15.06811 -14.34824 -13.87881 -13.21564 -12.96834 -12.45547 -12.20083 -11.46180 -11.29607 -11.11719 -10.91302 -10.81009 -10.52131 -10.08672 -9.94074 -9.67306 -9.58253 -9.04516 -8.73644 -8.31971 -6.61103 -5.71626 -3.14466 3.42478 3.49217 3.49926 4.13492 4.57511 4.87356 5.19379 5.37237 5.43520 5.52837 5.73261 5.78055 5.95192 6.03349 6.07393 6.18763 6.37835 6.43153 6.47920 6.61641 6.68689 6.77996 6.91540 7.28922 7.68521 7.88575 8.08372 8.53841 9.29528 9.96536 10.39909 11.35744 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038676 B = 0.014406 C = 0.011994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.784259 B = 1943.172972 C = 2334.036017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.153 3.847 11 C 0.036 3.964 12 O -0.362 6.362 13 C 0.114 3.886 14 C -0.178 4.178 15 C -0.180 4.180 16 C -0.150 4.150 17 C 0.191 3.809 18 H 0.252 0.748 19 H 0.033 0.967 20 H 0.079 0.921 21 H 0.031 0.969 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -8.418 -2.223 9.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.301 5.301 10 C 0.028 3.972 11 C -0.042 4.042 12 O -0.280 6.280 13 C 0.038 3.962 14 C -0.182 4.182 15 C -0.218 4.218 16 C -0.187 4.187 17 C 0.063 3.937 18 H 0.062 0.938 19 H 0.051 0.949 20 H 0.097 0.903 21 H 0.050 0.950 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.198 -8.163 -2.365 9.080 hybrid contribution 0.355 0.800 0.155 0.889 sum 3.553 -7.363 -2.209 8.469 Atomic orbital electron populations 1.70055 1.05203 1.25311 1.54698 1.25003 0.95280 0.98306 1.01017 0.86311 0.79071 0.83837 0.77675 1.21484 1.21893 1.20530 1.19223 0.92363 0.85103 1.41171 0.91825 1.43485 1.32394 1.01838 1.52423 1.21627 0.88989 0.96847 0.89748 1.23259 0.83942 0.99089 0.97941 1.87479 1.27986 1.56547 1.56006 1.20757 0.95122 0.88469 0.91891 1.22747 0.91906 1.03280 1.00247 1.22898 1.03422 0.95380 1.00095 1.22760 0.98954 0.95380 1.01575 1.20410 0.93316 0.87702 0.92312 0.93774 0.94945 0.90254 0.95037 0.91113 0.91412 0.94091 0.89160 0.90000 0.90013 0.88722 0.92840 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.64 11.01 55.49 0.61 -26.03 16 2 C 0.00 0.05 4.85 -17.43 -0.08 -0.03 16 3 Si 0.90 22.29 29.58 -169.99 -5.03 17.26 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.92 9.38 -15.06 -0.14 -7.06 16 8 H 0.06 1.75 6.94 -52.49 -0.36 1.39 16 9 N -0.58 -14.83 2.59 -171.56 -0.44 -15.27 16 10 C 0.15 3.78 5.07 -2.80 -0.01 3.77 16 11 C 0.04 0.74 6.42 37.76 0.24 0.98 16 12 O -0.36 -7.67 10.34 -33.97 -0.35 -8.02 16 13 C 0.11 2.06 5.87 34.80 0.20 2.26 16 14 C -0.18 -3.32 2.11 -155.35 -0.33 -3.65 16 15 C -0.18 -2.75 9.94 -26.67 -0.27 -3.02 16 16 C -0.15 -2.70 9.97 -26.63 -0.27 -2.96 16 17 C 0.19 4.12 5.39 -3.78 -0.02 4.10 16 18 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 19 H 0.03 0.84 8.02 -51.93 -0.42 0.43 16 20 H 0.08 2.20 6.35 -51.93 -0.33 1.87 16 21 H 0.03 0.58 7.26 -51.93 -0.38 0.20 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 24 H 0.04 0.67 7.39 -51.93 -0.38 0.29 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.85 7.21 -51.93 -0.37 1.47 16 29 H 0.05 1.16 7.86 -51.93 -0.41 0.75 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 242.01 15.07 3.65 3.65 Total: -1.00 -29.94 242.01 -6.56 -36.51 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.32 Total: -2.48 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.67 Total: -5.61 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.17 Total: -41.31 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.35 Total: -8.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.94 -6.56 -36.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307616133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.075 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds