Wall clock time and date at job start Mon Mar 30 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47077 * 270.00245 * 3 2 1 5 5 H 1.48494 * 109.46783 * 30.00477 * 3 2 1 6 6 H 1.48504 * 109.46764 * 150.00333 * 3 2 1 7 7 C 1.38816 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00108 * 195.89131 * 7 2 1 9 9 N 1.36939 * 119.99743 * 15.88595 * 7 2 1 10 10 C 1.47655 * 118.29038 * 26.61452 * 9 7 2 11 11 C 1.54158 * 111.44996 * 138.08345 * 10 9 7 12 12 O 1.40459 * 111.02701 * 319.57123 * 11 10 9 13 13 C 1.42940 * 113.43534 * 94.85069 * 12 11 10 14 14 C 1.48154 * 113.24800 * 276.80969 * 13 12 11 15 15 C 1.53161 * 120.27216 * 202.98860 * 14 13 12 16 16 C 1.52955 * 60.08257 * 109.39929 * 15 14 13 17 17 C 1.44547 * 118.29337 * 206.62976 * 9 7 2 18 18 H 0.97001 * 120.00330 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.07362 * 258.56747 * 10 9 7 20 20 H 1.08995 * 109.07871 * 17.59254 * 10 9 7 21 21 H 1.09007 * 109.16977 * 80.03225 * 11 10 9 22 22 H 1.09004 * 109.16995 * 199.24618 * 11 10 9 23 23 H 1.08994 * 108.72746 * 155.83701 * 13 12 11 24 24 H 1.09003 * 108.72892 * 37.78374 * 13 12 11 25 25 H 1.09006 * 117.49414 * 216.91025 * 15 14 13 26 26 H 1.08997 * 117.49386 * 1.88480 * 15 14 13 27 27 H 1.08992 * 117.49214 * 252.50339 * 16 15 14 28 28 H 1.09004 * 117.49614 * 107.50026 * 16 15 14 29 29 H 1.09004 * 109.74438 * 25.61920 * 17 9 7 30 30 H 1.08995 * 109.74969 * 146.28988 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0593 -1.2201 0.2555 9 7 1.3648 -2.3653 -0.3257 10 6 0.1856 -2.2873 -1.2108 11 6 0.1907 -3.4189 -2.2577 12 8 1.4847 -3.6361 -2.7588 13 6 2.1893 -4.6788 -2.0810 14 6 2.8413 -4.2266 -0.8299 15 6 4.0319 -5.0008 -0.2563 16 6 4.2470 -3.6178 -0.8733 17 6 1.8732 -3.6054 0.2158 18 1 -0.4851 0.8400 0.0004 19 1 -0.7187 -2.3647 -0.6071 20 1 0.1890 -1.3263 -1.7251 21 1 -0.1735 -4.3363 -1.7950 22 1 -0.4700 -3.1477 -3.0812 23 1 2.9526 -5.0772 -2.7493 24 1 1.4869 -5.4771 -1.8409 25 1 4.1024 -5.0844 0.8283 26 1 4.3890 -5.8637 -0.8184 27 1 4.7454 -3.5709 -1.8415 28 1 4.4588 -2.7914 -0.1948 29 1 2.4101 -3.4092 1.1439 30 1 1.0469 -4.2902 0.4061 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307616133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:35 Heat of formation + Delta-G solvation = -10.383036 kcal Electronic energy + Delta-G solvation = -13343.406433 eV Core-core repulsion = 11139.773701 eV Total energy + Delta-G solvation = -2203.632732 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48131 -37.56310 -36.65083 -33.10588 -30.63062 -28.36427 -27.31048 -25.08563 -23.12364 -22.00579 -20.26046 -18.86703 -17.15714 -17.02486 -16.77532 -16.10225 -15.59557 -15.04614 -14.62473 -14.21060 -13.90814 -13.11455 -12.96150 -12.88977 -12.77491 -12.35855 -12.25054 -12.02741 -11.72928 -11.40515 -11.21952 -10.51545 -10.44607 -10.26931 -8.64424 -7.83990 -5.29416 1.43225 1.46207 1.53434 2.49689 2.75799 3.29058 3.43776 3.76411 3.84067 3.97006 4.28883 4.31457 4.45586 4.53113 4.65528 4.76518 4.84287 4.85926 5.02214 5.07821 5.17419 5.34385 5.37300 5.39962 5.62751 5.73374 6.40874 6.56565 7.19097 7.95713 8.32768 9.20507 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038676 B = 0.014406 C = 0.011994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.784259 B = 1943.172972 C = 2334.036017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.961 3.039 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.253 4.253 8 H 0.061 0.939 9 N -0.598 5.598 10 C 0.159 3.841 11 C 0.049 3.951 12 O -0.384 6.384 13 C 0.107 3.893 14 C -0.193 4.193 15 C -0.138 4.138 16 C -0.167 4.167 17 C 0.186 3.814 18 H 0.248 0.752 19 H 0.009 0.991 20 H 0.040 0.960 21 H 0.055 0.945 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -10.166 -2.676 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.789 3.211 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.319 5.319 10 C 0.034 3.966 11 C -0.030 4.030 12 O -0.302 6.302 13 C 0.031 3.969 14 C -0.196 4.196 15 C -0.176 4.176 16 C -0.204 4.204 17 C 0.059 3.941 18 H 0.057 0.943 19 H 0.027 0.973 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.438 -9.950 -2.812 11.252 hybrid contribution 0.010 1.279 0.345 1.324 sum 4.448 -8.671 -2.467 10.053 Atomic orbital electron populations 1.70202 1.06409 1.25511 1.56251 1.25713 0.96073 1.01222 1.01711 0.85362 0.78215 0.80142 0.77336 1.21688 1.22029 1.19449 1.19478 0.92390 0.86351 1.40128 0.92119 1.43711 1.32473 1.02554 1.53160 1.21438 0.87989 0.96983 0.90210 1.23053 0.84488 0.98172 0.97253 1.87458 1.28320 1.57862 1.56580 1.21015 0.96000 0.88078 0.91854 1.22559 0.91683 1.05311 1.00073 1.22994 0.98990 0.94637 1.00951 1.22746 0.98933 0.96753 1.02006 1.20550 0.94143 0.86531 0.92906 0.94310 0.97271 0.94156 0.92642 0.89262 0.88927 0.91974 0.88242 0.86655 0.89214 0.91157 0.93804 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 11.01 21.65 0.24 -56.42 16 2 C -0.05 -3.02 4.85 84.86 0.41 -2.61 16 3 Si 0.96 46.66 29.58 68.60 2.03 48.69 16 4 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.29 9.38 84.03 0.79 -13.50 16 8 H 0.06 3.39 6.94 -2.91 -0.02 3.37 16 9 N -0.60 -30.73 2.59 -696.69 -1.80 -32.53 16 10 C 0.16 7.99 5.07 86.55 0.44 8.43 16 11 C 0.05 1.91 6.42 72.37 0.46 2.37 16 12 O -0.38 -15.45 10.34 -144.46 -1.49 -16.94 16 13 C 0.11 3.46 5.87 70.46 0.41 3.88 16 14 C -0.19 -6.69 2.11 -52.72 -0.11 -6.80 16 15 C -0.14 -3.66 9.94 30.63 0.30 -3.36 16 16 C -0.17 -5.69 9.97 30.66 0.31 -5.38 16 17 C 0.19 7.83 5.39 87.59 0.47 8.30 16 18 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 19 H 0.01 0.50 8.02 -2.39 -0.02 0.48 16 20 H 0.04 2.30 6.35 -2.39 -0.02 2.29 16 21 H 0.06 1.89 7.26 -2.38 -0.02 1.88 16 22 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 23 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 24 H 0.06 1.76 7.39 -2.39 -0.02 1.74 16 25 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 2.72 7.21 -2.39 -0.02 2.70 16 29 H 0.04 1.88 7.86 -2.39 -0.02 1.86 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -65.07 242.01 3.57 -61.50 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.11 Total: 4.37 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 3.49 Total: -8.67 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.56 Total: -88.95 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.49 Total: -16.94 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -65.07 3.57 -61.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307616133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds