Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53950 * 113.74237 * 2 1 4 4 N 1.47925 * 85.99684 * 138.00209 * 3 2 1 5 5 C 1.34780 * 134.49772 * 155.35643 * 4 3 2 6 6 O 1.21284 * 119.99485 * 179.97438 * 5 4 3 7 7 C 1.50693 * 120.00205 * 0.02562 * 5 4 3 8 8 C 1.53003 * 109.47295 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47295 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00181 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99984 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99880 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46893 * 60.00134 * 13 11 9 15 15 H 1.48503 * 109.46942 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47157 * 300.00001 * 13 11 9 17 17 C 1.47579 * 91.00789 * 335.35638 * 4 3 2 18 18 H 1.09002 * 109.46943 * 321.26571 * 1 2 3 19 19 H 1.08998 * 109.46740 * 81.25996 * 1 2 3 20 20 H 1.08990 * 109.46939 * 201.25905 * 1 2 3 21 21 H 1.09002 * 112.94408 * 228.40417 * 2 1 3 22 22 H 1.09006 * 113.76402 * 252.36366 * 3 2 1 23 23 H 1.08997 * 113.76968 * 23.74991 * 3 2 1 24 24 H 1.09003 * 109.47319 * 299.99914 * 7 5 4 25 25 H 1.09001 * 109.47328 * 59.99726 * 7 5 4 26 26 H 1.09003 * 109.46810 * 300.00156 * 8 7 5 27 27 H 1.09001 * 109.47213 * 59.99586 * 8 7 5 28 28 H 0.96995 * 120.00544 * 180.02562 * 12 11 9 29 29 H 1.09003 * 113.77049 * 270.34039 * 17 4 3 30 30 H 1.08993 * 113.77081 * 138.93800 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1499 1.4092 0.0000 4 7 3.1121 0.8731 0.9874 5 6 4.3646 1.2025 1.3608 6 8 4.9267 0.5650 2.2261 7 6 5.0661 2.3633 0.7041 8 6 6.4639 2.5212 1.3058 9 6 7.1656 3.6816 0.6487 10 1 6.6649 4.2495 -0.1215 11 6 8.4469 4.0184 1.0306 12 7 9.0565 3.3272 1.9688 13 14 9.3170 5.4564 0.2155 14 1 8.5368 6.6996 0.4415 15 1 10.6732 5.6105 0.8005 16 1 9.4325 5.2028 -1.2431 17 6 2.1498 -0.1672 1.3993 18 1 -0.3633 0.8017 0.6430 19 1 -0.3633 0.1562 -1.0157 20 1 -0.3633 -0.9577 0.3726 21 1 1.9550 -0.6664 -0.7507 22 1 2.6034 1.6896 -0.9507 23 1 1.4910 2.1790 0.4017 24 1 5.1507 2.1780 -0.3668 25 1 4.4932 3.2755 0.8707 26 1 6.3796 2.7062 2.3767 27 1 7.0366 1.6089 1.1388 28 1 9.9577 3.5643 2.2379 29 1 1.4909 0.1406 2.2112 30 1 2.6033 -1.1443 1.5649 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307945011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = -19.352476 kcal Electronic energy + Delta-G solvation = -12187.380788 eV Core-core repulsion = 9983.359112 eV Total energy + Delta-G solvation = -2204.021677 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.96272 -37.49508 -33.41923 -31.64511 -30.72956 -27.06857 -26.16750 -24.92815 -21.48587 -20.21830 -18.49727 -16.87895 -16.00508 -15.61028 -15.15451 -14.48860 -14.38358 -13.48355 -13.31712 -12.72603 -12.29743 -12.11733 -12.03308 -11.56136 -11.37467 -11.08176 -10.89197 -10.63321 -10.57635 -9.92266 -9.62636 -9.14250 -8.94941 -8.40682 -8.28591 -5.93640 -3.98231 3.11496 3.30724 3.36011 3.40452 3.42482 4.24204 4.48506 4.78777 4.88324 5.16731 5.24660 5.40944 5.45687 5.46371 5.54943 5.64787 5.74955 5.84214 6.14535 6.19133 6.28775 6.37668 6.94081 7.76386 7.88910 8.06402 8.10663 8.41097 8.79733 9.09991 9.65002 11.17392 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.077267 B = 0.006613 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.292291 B = 4233.127098 C = 4538.654892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.107 3.893 4 N -0.657 5.657 5 C 0.531 3.469 6 O -0.535 6.535 7 C -0.122 4.122 8 C 0.036 3.964 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.105 3.895 18 H 0.058 0.942 19 H 0.059 0.941 20 H 0.060 0.940 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 -4.387 -5.424 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.017 4.017 4 N -0.395 5.395 5 C 0.323 3.677 6 O -0.410 6.410 7 C -0.162 4.162 8 C -0.001 4.001 9 C -0.566 4.566 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.017 4.017 18 H 0.077 0.923 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.117 0.883 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.992 -4.682 -4.770 17.333 hybrid contribution 0.493 0.842 -0.386 1.049 sum -15.500 -3.840 -5.156 16.780 Atomic orbital electron populations 1.21702 0.93989 1.02189 1.02151 1.23164 0.95851 0.97678 0.98047 1.23280 0.89295 0.96056 0.93040 1.50331 1.13061 1.34555 1.41586 1.21363 0.78945 0.85434 0.81918 1.90670 1.64849 1.53590 1.31931 1.21810 1.00173 0.93725 1.00486 1.18915 0.87504 0.97219 0.96470 1.21179 0.99604 1.14590 1.21187 0.92670 1.25026 0.97471 0.96721 0.95133 1.69987 1.13454 1.39825 1.29610 0.86639 0.78749 0.82849 0.79609 1.20256 1.21261 1.20243 1.23110 0.89278 0.93180 0.96172 0.92260 0.92149 0.92143 0.88260 0.90019 0.89999 0.90426 0.90436 0.95846 0.95816 0.92886 0.90413 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.71 37.16 0.36 -0.60 16 2 C -0.13 -1.20 4.54 -89.69 -0.41 -1.60 16 3 C 0.11 1.18 8.20 -2.77 -0.02 1.16 16 4 N -0.66 -10.54 3.62 -178.05 -0.64 -11.18 16 5 C 0.53 11.33 8.06 -10.99 -0.09 11.25 16 6 O -0.54 -13.76 16.71 5.55 0.09 -13.67 16 7 C -0.12 -2.66 5.39 -27.88 -0.15 -2.82 16 8 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 9 C -0.53 -15.36 9.11 -34.44 -0.31 -15.67 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -27.96 13.29 55.43 0.74 -27.23 16 13 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.11 1.31 8.40 -2.96 -0.02 1.29 16 18 H 0.06 0.39 7.98 -51.93 -0.41 -0.03 16 19 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 20 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16 24 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 25 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.08 0.87 8.10 -51.93 -0.42 0.44 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 260.91 15.07 3.93 3.93 Total: -1.00 -34.88 260.91 -6.36 -41.24 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -4.59 Total: -5.58 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.86 Total: -4.47 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.09 Total: -38.41 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.88 -6.36 -41.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307945011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.887 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds