Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53950 * 113.74237 * 2 1 4 4 N 1.47925 * 85.99684 * 138.00209 * 3 2 1 5 5 C 1.34780 * 134.49772 * 155.35643 * 4 3 2 6 6 O 1.21284 * 119.99485 * 179.97438 * 5 4 3 7 7 C 1.50693 * 120.00205 * 0.02562 * 5 4 3 8 8 C 1.53003 * 109.47295 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47295 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00181 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99984 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99880 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46893 * 60.00134 * 13 11 9 15 15 H 1.48503 * 109.46942 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47157 * 300.00001 * 13 11 9 17 17 C 1.47579 * 91.00789 * 335.35638 * 4 3 2 18 18 H 1.09002 * 109.46943 * 321.26571 * 1 2 3 19 19 H 1.08998 * 109.46740 * 81.25996 * 1 2 3 20 20 H 1.08990 * 109.46939 * 201.25905 * 1 2 3 21 21 H 1.09002 * 112.94408 * 228.40417 * 2 1 3 22 22 H 1.09006 * 113.76402 * 252.36366 * 3 2 1 23 23 H 1.08997 * 113.76968 * 23.74991 * 3 2 1 24 24 H 1.09003 * 109.47319 * 299.99914 * 7 5 4 25 25 H 1.09001 * 109.47328 * 59.99726 * 7 5 4 26 26 H 1.09003 * 109.46810 * 300.00156 * 8 7 5 27 27 H 1.09001 * 109.47213 * 59.99586 * 8 7 5 28 28 H 0.96995 * 120.00544 * 180.02562 * 12 11 9 29 29 H 1.09003 * 113.77049 * 270.34039 * 17 4 3 30 30 H 1.08993 * 113.77081 * 138.93800 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1499 1.4092 0.0000 4 7 3.1121 0.8731 0.9874 5 6 4.3646 1.2025 1.3608 6 8 4.9267 0.5650 2.2261 7 6 5.0661 2.3633 0.7041 8 6 6.4639 2.5212 1.3058 9 6 7.1656 3.6816 0.6487 10 1 6.6649 4.2495 -0.1215 11 6 8.4469 4.0184 1.0306 12 7 9.0565 3.3272 1.9688 13 14 9.3170 5.4564 0.2155 14 1 8.5368 6.6996 0.4415 15 1 10.6732 5.6105 0.8005 16 1 9.4325 5.2028 -1.2431 17 6 2.1498 -0.1672 1.3993 18 1 -0.3633 0.8017 0.6430 19 1 -0.3633 0.1562 -1.0157 20 1 -0.3633 -0.9577 0.3726 21 1 1.9550 -0.6664 -0.7507 22 1 2.6034 1.6896 -0.9507 23 1 1.4910 2.1790 0.4017 24 1 5.1507 2.1780 -0.3668 25 1 4.4932 3.2755 0.8707 26 1 6.3796 2.7062 2.3767 27 1 7.0366 1.6089 1.1388 28 1 9.9577 3.5643 2.2379 29 1 1.4909 0.1406 2.2112 30 1 2.6033 -1.1443 1.5649 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307945011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = -43.644423 kcal Electronic energy + Delta-G solvation = -12188.434166 eV Core-core repulsion = 9983.359112 eV Total energy + Delta-G solvation = -2205.075054 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21680 -38.98817 -35.59546 -33.24252 -32.23934 -28.55660 -27.13012 -26.64128 -23.37597 -21.29547 -19.86710 -18.76825 -17.62557 -16.94585 -16.67302 -16.39755 -15.88327 -14.67093 -14.49148 -14.20843 -13.77605 -13.67448 -13.35222 -13.02908 -12.78769 -12.52985 -12.33995 -12.12016 -11.96953 -11.68962 -11.43206 -11.34921 -10.64893 -10.58211 -9.68597 -8.19512 -6.34793 1.41198 1.46553 1.54394 1.63778 1.91001 2.42273 3.12987 3.38842 3.67938 4.06419 4.16335 4.40013 4.47100 4.49937 4.54785 4.64660 4.66419 4.87502 4.99205 5.08050 5.16614 5.30410 5.45704 5.52166 5.57365 5.81213 6.14265 6.68394 6.83821 7.21153 7.35787 8.93324 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.077267 B = 0.006613 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.292291 B = 4233.127098 C = 4538.654892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.101 3.899 4 N -0.659 5.659 5 C 0.524 3.476 6 O -0.599 6.599 7 C -0.109 4.109 8 C 0.042 3.958 9 C -0.546 4.546 10 H 0.076 0.924 11 C -0.007 4.007 12 N -0.939 5.939 13 Si 0.978 3.022 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.261 1.261 17 C 0.093 3.907 18 H 0.065 0.935 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.099 0.901 26 H -0.020 1.020 27 H -0.019 1.019 28 H 0.264 0.736 29 H 0.095 0.905 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.817 -3.070 -7.604 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.020 4.020 4 N -0.395 5.395 5 C 0.316 3.684 6 O -0.480 6.480 7 C -0.149 4.149 8 C 0.005 3.995 9 C -0.584 4.584 10 H 0.094 0.906 11 C -0.204 4.204 12 N -0.579 5.579 13 Si 0.801 3.199 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.186 1.186 17 C -0.028 4.028 18 H 0.084 0.916 19 H 0.094 0.906 20 H 0.087 0.913 21 H 0.121 0.879 22 H 0.112 0.888 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.118 0.882 26 H -0.001 1.001 27 H -0.001 1.001 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.175 -3.364 -7.001 19.765 hybrid contribution 1.040 0.365 0.299 1.142 sum -17.135 -2.999 -6.702 18.642 Atomic orbital electron populations 1.21677 0.91292 1.02983 1.03404 1.23037 0.97716 0.96251 0.95482 1.23742 0.88079 0.97792 0.92351 1.50417 1.12091 1.35269 1.41718 1.21155 0.80836 0.84995 0.81387 1.90634 1.67050 1.55573 1.34743 1.21537 0.96841 0.95380 1.01112 1.18697 0.91086 0.95308 0.94435 1.21656 1.00227 1.14866 1.21605 0.90561 1.26188 0.98517 1.00132 0.95603 1.70178 1.13987 1.42157 1.31538 0.85312 0.77070 0.78640 0.78835 1.18589 1.21187 1.18568 1.23499 0.88532 0.91739 0.99074 0.91634 0.90575 0.91339 0.87892 0.88766 0.87584 0.88227 0.88238 1.00130 1.00099 0.92759 0.88707 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.71 71.98 0.70 -0.57 16 2 C -0.11 -1.63 4.54 -10.13 -0.05 -1.68 16 3 C 0.10 1.91 8.20 86.42 0.71 2.62 16 4 N -0.66 -20.40 3.62 -835.62 -3.02 -23.42 16 5 C 0.52 22.83 8.06 87.65 0.71 23.54 16 6 O -0.60 -32.61 16.71 -3.04 -0.05 -32.66 16 7 C -0.11 -4.78 5.39 29.85 0.16 -4.62 16 8 C 0.04 2.49 4.26 29.85 0.13 2.62 16 9 C -0.55 -32.07 9.11 25.60 0.23 -31.83 16 10 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 11 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 12 N -0.94 -60.95 13.29 21.45 0.28 -60.66 16 13 Si 0.98 44.92 29.54 68.60 2.03 46.95 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 17 C 0.09 2.18 8.40 86.49 0.73 2.91 16 18 H 0.06 0.57 7.98 -2.39 -0.02 0.55 16 19 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 20 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 21 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.11 1.57 7.99 -2.39 -0.02 1.55 16 24 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 25 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 26 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 27 H -0.02 -1.29 8.10 -2.39 -0.02 -1.30 16 28 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 29 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -80.14 260.91 4.11 -76.03 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.10 Total: 0.73 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 3.78 Total: -6.97 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.74 Total: -84.08 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -80.14 4.11 -76.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307945011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.388 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds