Wall clock time and date at job start Mon Mar 30 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47326 * 89.97356 * 6 5 4 8 8 C 1.46901 * 111.00282 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47326 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99896 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00037 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00161 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99747 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47510 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46934 * 120.00219 * 13 11 9 16 16 H 1.48500 * 109.47025 * 239.99649 * 13 11 9 17 17 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 18 18 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 19 19 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 20 20 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 21 21 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 22 22 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 23 23 H 1.00903 * 110.99731 * 56.04650 * 7 6 5 24 24 H 1.09003 * 109.46722 * 300.00061 * 8 7 6 25 25 H 1.08998 * 109.46986 * 59.99442 * 8 7 6 26 26 H 0.97000 * 120.00267 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 7 5.2236 -1.7360 1.3867 8 6 6.4442 -2.5525 1.4269 9 6 6.8287 -2.8110 2.8608 10 1 6.2263 -2.4094 3.6622 11 6 7.9488 -3.5612 3.1498 12 7 8.6821 -4.0507 2.1739 13 14 8.4257 -3.8810 4.9273 14 1 7.4448 -3.2251 5.8288 15 1 8.4310 -5.3439 5.1828 16 1 9.7803 -3.3289 5.1834 17 8 2.3021 -1.0832 0.0002 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3633 0.8901 0.5136 21 1 4.6248 -2.4057 -0.5124 22 1 5.6151 -0.9265 -0.5120 23 1 4.4765 -2.1763 1.9025 24 1 6.2630 -3.5018 0.9228 25 1 7.2526 -2.0223 0.9234 26 1 9.4699 -4.5788 2.3772 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308158490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:30 Heat of formation + Delta-G solvation = 33.637211 kcal Electronic energy + Delta-G solvation = -11800.160193 eV Core-core repulsion = 9494.895979 eV Total energy + Delta-G solvation = -2305.264215 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.02582 -35.98867 -35.80547 -33.11797 -32.23205 -29.25981 -27.01512 -24.83208 -22.56718 -22.05315 -21.52533 -17.26753 -17.10299 -16.48157 -15.30307 -14.77761 -14.46564 -14.17283 -13.63272 -13.19374 -12.95906 -12.37318 -12.20775 -11.80751 -11.67404 -11.42657 -10.88559 -10.79051 -10.69745 -10.10855 -9.40522 -9.24996 -8.57399 -7.60229 -6.11499 -4.13992 1.29450 2.39808 2.56501 3.27833 3.35378 3.40724 3.95242 4.37678 4.52852 4.89180 5.08137 5.16732 5.25294 5.29178 5.49889 5.54173 5.77951 5.83165 5.90883 6.99054 7.21277 7.62821 7.96897 8.11450 8.37714 8.50097 8.93828 9.51274 10.99603 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.075792 B = 0.006301 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.345251 B = 4442.485812 C = 4574.775697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.145 3.855 3 N -0.292 5.292 4 N -0.278 5.278 5 C 0.185 3.815 6 C 0.151 3.849 7 N -0.681 5.681 8 C 0.194 3.806 9 C -0.517 4.517 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.902 3.098 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 O -0.229 6.229 18 H 0.095 0.905 19 H 0.090 0.910 20 H 0.104 0.896 21 H 0.056 0.944 22 H 0.115 0.885 23 H 0.334 0.666 24 H -0.006 1.006 25 H 0.036 0.964 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 3.371 -4.899 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 N -0.140 5.140 4 N -0.125 5.125 5 C -0.026 4.026 6 C 0.021 3.979 7 N -0.314 5.314 8 C 0.069 3.931 9 C -0.556 4.556 10 H 0.083 0.917 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.730 3.270 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 O -0.108 6.108 18 H 0.113 0.887 19 H 0.109 0.891 20 H 0.122 0.878 21 H 0.074 0.926 22 H 0.133 0.867 23 H 0.151 0.849 24 H 0.011 0.989 25 H 0.054 0.946 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.913 5.090 -4.872 14.710 hybrid contribution -0.329 -2.292 0.649 2.405 sum -13.242 2.798 -4.223 14.178 Atomic orbital electron populations 1.20275 0.80566 1.05481 1.04848 1.27919 0.97757 0.80033 1.00886 1.74373 0.96427 1.25848 1.17305 1.74408 1.11465 1.09486 1.17113 1.28359 0.84781 0.91764 0.97744 1.20469 0.86579 0.95719 0.95182 1.60773 1.08966 1.54013 1.07608 1.19661 0.85554 0.89772 0.98126 1.21149 1.10498 1.32090 0.91816 0.91742 1.24978 0.96139 0.95560 0.97783 1.69959 1.16706 1.35414 1.31457 0.86377 0.78499 0.77780 0.84393 1.19618 1.21029 1.20859 1.84784 1.17953 1.38375 1.69733 0.88670 0.89080 0.87792 0.92617 0.86737 0.84922 0.98852 0.94590 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.00 0.38 -0.03 15 2 C 0.15 2.02 8.48 -12.94 -0.11 1.91 15 3 N -0.29 -5.02 12.22 32.55 0.40 -4.62 15 4 N -0.28 -5.32 12.22 32.55 0.40 -4.92 15 5 C 0.18 3.24 7.99 -12.94 -0.10 3.14 15 6 C 0.15 2.66 6.31 -4.98 -0.03 2.62 15 7 N -0.68 -14.50 6.48 -116.34 -0.75 -15.25 15 8 C 0.19 4.92 5.44 -4.98 -0.03 4.89 15 9 C -0.52 -14.42 9.32 -34.44 -0.32 -14.74 15 10 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -26.19 13.29 55.43 0.74 -25.46 15 13 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 15 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 O -0.23 -3.60 10.87 5.37 0.06 -3.55 15 18 H 0.09 0.53 8.14 -51.93 -0.42 0.11 15 19 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.11 1.95 8.14 -51.93 -0.42 1.52 15 23 H 0.33 6.83 8.72 -39.29 -0.34 6.49 15 24 H -0.01 -0.16 8.14 -51.93 -0.42 -0.59 15 25 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 241.28 15.07 3.64 3.64 Total: -1.00 -32.06 241.28 -3.71 -35.77 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -2.85 Total: -1.37 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.31 Total: -0.69 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.78 Total: -50.25 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: 0.06 Total: -3.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.06 -3.71 -35.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308158490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.407 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds