Wall clock time and date at job start Mon Mar 30 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47326 * 89.97356 * 6 5 4 8 8 C 1.46901 * 111.00282 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47326 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99896 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00037 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00161 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99747 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47510 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46934 * 120.00219 * 13 11 9 16 16 H 1.48500 * 109.47025 * 239.99649 * 13 11 9 17 17 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 18 18 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 19 19 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 20 20 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 21 21 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 22 22 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 23 23 H 1.00903 * 110.99731 * 56.04650 * 7 6 5 24 24 H 1.09003 * 109.46722 * 300.00061 * 8 7 6 25 25 H 1.08998 * 109.46986 * 59.99442 * 8 7 6 26 26 H 0.97000 * 120.00267 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 7 5.2236 -1.7360 1.3867 8 6 6.4442 -2.5525 1.4269 9 6 6.8287 -2.8110 2.8608 10 1 6.2263 -2.4094 3.6622 11 6 7.9488 -3.5612 3.1498 12 7 8.6821 -4.0507 2.1739 13 14 8.4257 -3.8810 4.9273 14 1 7.4448 -3.2251 5.8288 15 1 8.4310 -5.3439 5.1828 16 1 9.7803 -3.3289 5.1834 17 8 2.3021 -1.0832 0.0002 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3633 0.8901 0.5136 21 1 4.6248 -2.4057 -0.5124 22 1 5.6151 -0.9265 -0.5120 23 1 4.4765 -2.1763 1.9025 24 1 6.2630 -3.5018 0.9228 25 1 7.2526 -2.0223 0.9234 26 1 9.4699 -4.5788 2.3772 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308158490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:30 Heat of formation + Delta-G solvation = 5.452355 kcal Electronic energy + Delta-G solvation = -11801.382381 eV Core-core repulsion = 9494.895979 eV Total energy + Delta-G solvation = -2306.486402 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.27741 -37.51823 -37.24005 -34.86739 -33.65068 -30.63952 -28.57079 -26.49106 -23.86700 -23.62725 -23.10811 -18.85422 -18.52376 -17.99995 -17.04718 -16.45701 -15.76895 -15.56015 -15.19975 -14.32802 -13.97597 -13.58834 -13.51391 -13.45498 -13.33065 -12.95988 -12.68806 -12.66965 -12.12069 -12.01403 -11.38244 -10.69619 -10.58100 -9.35308 -8.24851 -6.35340 0.08034 1.21532 1.29481 1.41590 1.43120 1.56257 2.39517 2.82247 3.09539 3.41403 3.51357 3.87408 4.17674 4.38047 4.46179 4.54344 4.59171 4.74475 4.99651 5.06853 5.18861 5.55268 5.93186 6.25017 6.48620 6.80780 7.23666 7.34963 8.86689 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.075792 B = 0.006301 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.345251 B = 4442.485812 C = 4574.775697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.168 3.832 3 N -0.330 5.330 4 N -0.307 5.307 5 C 0.176 3.824 6 C 0.157 3.843 7 N -0.687 5.687 8 C 0.209 3.791 9 C -0.539 4.539 10 H 0.062 0.938 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.972 3.028 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.279 1.279 17 O -0.231 6.231 18 H 0.123 0.877 19 H 0.113 0.887 20 H 0.120 0.880 21 H 0.077 0.923 22 H 0.116 0.884 23 H 0.339 0.661 24 H -0.020 1.020 25 H 0.014 0.986 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 3.146 -4.343 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.043 4.043 3 N -0.177 5.177 4 N -0.153 5.153 5 C -0.036 4.036 6 C 0.026 3.974 7 N -0.319 5.319 8 C 0.082 3.918 9 C -0.577 4.577 10 H 0.080 0.920 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.204 1.204 17 O -0.111 6.111 18 H 0.141 0.859 19 H 0.132 0.868 20 H 0.139 0.861 21 H 0.095 0.905 22 H 0.134 0.866 23 H 0.156 0.844 24 H -0.002 1.002 25 H 0.032 0.968 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.497 4.889 -4.325 15.898 hybrid contribution 0.016 -2.187 0.415 2.226 sum -14.481 2.702 -3.910 15.241 Atomic orbital electron populations 1.20750 0.75935 1.07363 1.07169 1.29225 0.99615 0.78706 0.96778 1.74319 0.96154 1.27220 1.20003 1.74332 1.12976 1.10325 1.17684 1.28048 0.85357 0.91354 0.98879 1.20389 0.87074 0.96735 0.93169 1.60563 1.08102 1.53001 1.10266 1.19299 0.86594 0.89249 0.96638 1.21498 1.10915 1.32367 0.92924 0.92019 1.25870 0.96005 0.95177 1.02250 1.70062 1.17197 1.35974 1.33672 0.85297 0.78123 0.77954 0.78995 1.19023 1.20086 1.20428 1.84802 1.17453 1.38944 1.69885 0.85850 0.86825 0.86150 0.90533 0.86611 0.84392 1.00193 0.96813 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.62 10.51 71.24 0.75 0.12 15 2 C 0.17 4.32 8.48 88.34 0.75 5.07 15 3 N -0.33 -11.08 12.22 -165.50 -2.02 -13.10 15 4 N -0.31 -11.68 12.22 -165.50 -2.02 -13.71 15 5 C 0.18 6.09 7.99 88.34 0.71 6.79 15 6 C 0.16 5.47 6.31 85.56 0.54 6.01 15 7 N -0.69 -29.35 6.48 -521.98 -3.38 -32.73 15 8 C 0.21 10.75 5.44 85.56 0.47 11.22 15 9 C -0.54 -30.22 9.32 25.60 0.24 -29.98 15 10 H 0.06 3.42 7.81 -2.91 -0.02 3.39 15 11 C 0.01 0.33 5.46 84.65 0.46 0.79 15 12 N -0.93 -54.60 13.29 21.45 0.28 -54.31 15 13 Si 0.97 43.75 29.54 68.60 2.03 45.78 15 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 17 O -0.23 -6.91 10.87 -3.71 -0.04 -6.95 15 18 H 0.12 0.83 8.14 -2.39 -0.02 0.81 15 19 H 0.11 0.86 8.14 -2.39 -0.02 0.84 15 20 H 0.12 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 22 H 0.12 3.98 8.14 -2.38 -0.02 3.96 15 23 H 0.34 13.81 8.72 -89.69 -0.78 13.03 15 24 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 15 25 H 0.01 0.76 8.14 -2.39 -0.02 0.74 15 26 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -68.91 241.28 -0.84 -69.74 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 0.41 Total: 5.25 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 3.91 Total: 0.02 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -7.14 Total: -113.85 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.04 Total: -6.95 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -68.91 -0.84 -69.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308158490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.197 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds