Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00332 * 2 1 4 4 H 1.48498 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46981 * 300.00030 * 3 2 1 6 6 H 1.48495 * 109.46866 * 59.99990 * 3 2 1 7 7 C 1.38817 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99984 * 165.02487 * 7 2 1 9 9 N 1.36932 * 119.99979 * 345.02083 * 7 2 1 10 10 C 1.46505 * 119.99901 * 125.28625 * 9 7 2 11 11 C 1.53001 * 117.49790 * 3.39298 * 10 9 7 12 12 C 1.53005 * 117.49689 * 294.73253 * 10 9 7 13 13 C 1.46498 * 120.00423 * 305.28607 * 9 7 2 14 14 H 1.08999 * 115.56484 * 154.30972 * 13 9 7 15 15 C 1.53005 * 117.49573 * 8.61907 * 13 9 7 16 16 C 1.53000 * 117.49721 * 300.00010 * 13 9 7 17 17 H 1.09002 * 117.50008 * 214.97816 * 16 13 9 18 18 C 1.53005 * 117.49787 * 359.97388 * 16 13 9 19 19 O 1.42903 * 109.46878 * 184.91152 * 18 16 13 20 20 H 0.96998 * 119.99626 * 355.06962 * 1 2 3 21 21 H 1.09001 * 115.54978 * 149.06688 * 10 9 7 22 22 H 1.08993 * 117.49746 * 0.02562 * 11 10 9 23 23 H 1.08998 * 117.49558 * 145.02518 * 11 10 9 24 24 H 1.08998 * 117.50163 * 214.97884 * 12 10 9 25 25 H 1.09002 * 117.49633 * 359.97438 * 12 10 9 26 26 H 1.08998 * 117.49902 * 145.02144 * 15 13 9 27 27 H 1.08999 * 117.50023 * 0.02562 * 15 13 9 28 28 H 1.08998 * 109.47212 * 304.91477 * 18 16 13 29 29 H 1.09006 * 109.46985 * 64.91526 * 18 16 13 30 30 H 0.96699 * 113.99341 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0626 -1.2181 -0.2422 9 7 1.3603 -2.3680 0.3054 10 6 1.4048 -3.4978 -0.6263 11 6 2.2586 -3.3411 -1.8862 12 6 0.7314 -3.3171 -1.9882 13 6 0.6206 -2.4857 1.5645 14 1 -0.1954 -3.2083 1.5648 15 6 0.4404 -1.2162 2.3992 16 6 1.4066 -2.3072 2.8649 17 1 1.1077 -2.9124 3.7208 18 6 2.9052 -2.0201 2.7509 19 8 3.4867 -1.9985 4.0561 20 1 -0.4849 0.8370 0.0722 21 1 1.3587 -4.4862 -0.1692 22 1 2.7875 -2.3978 -2.0217 23 1 2.7738 -4.2267 -2.2583 24 1 0.2426 -4.1868 -2.4274 25 1 0.2549 -2.3579 -2.1908 26 1 -0.4942 -1.1035 2.9487 27 1 0.8719 -0.2934 2.0114 28 1 3.3800 -2.7990 2.1544 29 1 3.0543 -1.0529 2.2707 30 1 4.4372 -1.8211 4.0602 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379326173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = 26.972224 kcal Electronic energy + Delta-G solvation = -13153.047548 eV Core-core repulsion = 10951.034661 eV Total energy + Delta-G solvation = -2202.012887 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.89408 -36.10959 -34.86580 -32.24529 -29.68718 -25.95650 -24.51502 -21.31948 -20.60424 -19.92732 -19.17996 -16.78084 -16.07623 -15.47665 -14.67339 -14.15697 -13.73004 -13.44455 -12.89323 -12.31092 -11.86349 -11.45519 -11.13621 -10.85419 -10.71513 -10.39420 -10.14393 -10.00922 -9.80759 -9.59491 -9.24006 -8.95913 -8.63578 -8.14007 -6.35384 -5.74800 -3.70803 3.24604 3.35040 3.35688 4.31781 4.85156 4.98398 5.10494 5.24894 5.42637 5.97814 6.12252 6.17488 6.23072 6.36373 6.40551 6.47711 6.56362 6.62662 6.72017 6.79896 6.96525 7.13307 7.22437 7.35026 7.64019 7.73885 8.33144 8.54657 9.13766 9.62444 10.34270 11.06074 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.020110 C = 0.013688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.452888 B = 1392.032569 C = 2045.096286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.279 4.279 8 H 0.057 0.943 9 N -0.520 5.520 10 C 0.122 3.878 11 C -0.191 4.191 12 C -0.216 4.216 13 C 0.159 3.841 14 H 0.085 0.915 15 C -0.154 4.154 16 C -0.211 4.211 17 H 0.083 0.917 18 C 0.125 3.875 19 O -0.590 6.590 20 H 0.256 0.744 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -3.526 1.495 5.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.708 3.292 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.409 4.409 8 H 0.074 0.926 9 N -0.235 5.235 10 C 0.014 3.986 11 C -0.229 4.229 12 C -0.257 4.257 13 C 0.050 3.950 14 H 0.103 0.897 15 C -0.193 4.193 16 C -0.233 4.233 17 H 0.101 0.899 18 C 0.048 3.952 19 O -0.394 6.394 20 H 0.066 0.934 21 H 0.103 0.897 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.562 -3.509 1.569 4.619 hybrid contribution 0.797 1.147 -0.260 1.421 sum 3.360 -2.361 1.309 4.310 Atomic orbital electron populations 1.70161 1.05467 1.26198 1.47817 1.25578 0.95032 0.98928 0.96941 0.86621 0.80341 0.84472 0.77766 1.19651 1.21140 1.20875 1.18736 0.91465 0.83984 1.46730 0.92563 1.42699 1.57431 1.10203 1.13153 1.21227 1.01414 0.91428 0.84540 1.23007 0.93900 1.01902 1.04129 1.23345 0.94285 1.01892 1.06181 1.20818 0.94040 0.98303 0.81812 0.89740 1.23318 0.98046 0.95953 1.01973 1.22840 0.92479 1.06463 1.01545 0.89930 1.21579 0.92039 1.00290 0.81271 1.86434 1.25929 1.95380 1.31691 0.93375 0.89719 0.88451 0.90991 0.91504 0.88644 0.91709 0.86806 0.94311 0.92450 0.78965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.40 11.52 55.49 0.64 -22.77 16 2 C 0.04 1.03 3.14 -17.43 -0.05 0.97 16 3 Si 0.88 20.42 29.45 -169.99 -5.01 15.42 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.28 -7.11 5.31 -15.06 -0.08 -7.19 16 8 H 0.06 1.47 7.46 -52.49 -0.39 1.08 16 9 N -0.52 -12.46 2.66 -158.14 -0.42 -12.88 16 10 C 0.12 2.62 6.61 -67.92 -0.45 2.17 16 11 C -0.19 -3.80 9.83 -26.69 -0.26 -4.06 16 12 C -0.22 -4.50 10.36 -26.69 -0.28 -4.78 16 13 C 0.16 3.67 6.27 -67.93 -0.43 3.24 16 14 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 15 C -0.15 -3.61 8.13 -26.73 -0.22 -3.82 16 16 C -0.21 -4.58 6.06 -90.62 -0.55 -5.13 16 17 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 18 C 0.12 2.61 6.10 37.16 0.23 2.84 16 19 O -0.59 -11.16 13.66 -35.23 -0.48 -11.64 16 20 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 21 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 22 H 0.10 2.11 6.82 -51.93 -0.35 1.76 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.10 2.31 8.14 -51.93 -0.42 1.88 16 26 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.11 2.93 4.64 -51.93 -0.24 2.69 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 30 H 0.37 5.02 9.12 45.56 0.42 5.44 16 LS Contribution 248.57 15.07 3.75 3.75 Total: -1.00 -27.98 248.57 -7.04 -35.02 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -3.43 Total: 8.87 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.09 Total: -15.77 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.22 Total: -35.65 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.48 Total: -11.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.01 Total: 15.42 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.98 -7.04 -35.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379326173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.997 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds