Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00332 * 2 1 4 4 H 1.48498 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46981 * 300.00030 * 3 2 1 6 6 H 1.48495 * 109.46866 * 59.99990 * 3 2 1 7 7 C 1.38817 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99984 * 165.02487 * 7 2 1 9 9 N 1.36932 * 119.99979 * 345.02083 * 7 2 1 10 10 C 1.46505 * 119.99901 * 125.28625 * 9 7 2 11 11 C 1.53001 * 117.49790 * 3.39298 * 10 9 7 12 12 C 1.53005 * 117.49689 * 294.73253 * 10 9 7 13 13 C 1.46498 * 120.00423 * 305.28607 * 9 7 2 14 14 H 1.08999 * 115.56484 * 154.30972 * 13 9 7 15 15 C 1.53005 * 117.49573 * 8.61907 * 13 9 7 16 16 C 1.53000 * 117.49721 * 300.00010 * 13 9 7 17 17 H 1.09002 * 117.50008 * 214.97816 * 16 13 9 18 18 C 1.53005 * 117.49787 * 359.97388 * 16 13 9 19 19 O 1.42903 * 109.46878 * 184.91152 * 18 16 13 20 20 H 0.96998 * 119.99626 * 355.06962 * 1 2 3 21 21 H 1.09001 * 115.54978 * 149.06688 * 10 9 7 22 22 H 1.08993 * 117.49746 * 0.02562 * 11 10 9 23 23 H 1.08998 * 117.49558 * 145.02518 * 11 10 9 24 24 H 1.08998 * 117.50163 * 214.97884 * 12 10 9 25 25 H 1.09002 * 117.49633 * 359.97438 * 12 10 9 26 26 H 1.08998 * 117.49902 * 145.02144 * 15 13 9 27 27 H 1.08999 * 117.50023 * 0.02562 * 15 13 9 28 28 H 1.08998 * 109.47212 * 304.91477 * 18 16 13 29 29 H 1.09006 * 109.46985 * 64.91526 * 18 16 13 30 30 H 0.96699 * 113.99341 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0626 -1.2181 -0.2422 9 7 1.3603 -2.3680 0.3054 10 6 1.4048 -3.4978 -0.6263 11 6 2.2586 -3.3411 -1.8862 12 6 0.7314 -3.3171 -1.9882 13 6 0.6206 -2.4857 1.5645 14 1 -0.1954 -3.2083 1.5648 15 6 0.4404 -1.2162 2.3992 16 6 1.4066 -2.3072 2.8649 17 1 1.1077 -2.9124 3.7208 18 6 2.9052 -2.0201 2.7509 19 8 3.4867 -1.9985 4.0561 20 1 -0.4849 0.8370 0.0722 21 1 1.3587 -4.4862 -0.1692 22 1 2.7875 -2.3978 -2.0217 23 1 2.7738 -4.2267 -2.2583 24 1 0.2426 -4.1868 -2.4274 25 1 0.2549 -2.3579 -2.1908 26 1 -0.4942 -1.1035 2.9487 27 1 0.8719 -0.2934 2.0114 28 1 3.3800 -2.7990 2.1544 29 1 3.0543 -1.0529 2.2707 30 1 4.4372 -1.8211 4.0602 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379326173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = 8.756784 kcal Electronic energy + Delta-G solvation = -13153.837429 eV Core-core repulsion = 10951.034661 eV Total energy + Delta-G solvation = -2202.802768 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.65231 -37.72784 -36.50004 -34.16614 -31.53030 -27.67656 -26.41161 -22.96588 -22.34946 -21.70991 -20.95294 -18.43523 -17.88623 -17.21089 -16.56899 -15.79746 -15.50400 -15.11336 -14.63169 -14.04015 -13.66496 -13.30748 -12.93709 -12.68297 -12.52428 -12.09938 -11.96829 -11.74769 -11.55037 -11.26088 -10.86630 -10.70158 -10.42857 -10.03209 -8.29520 -7.64637 -5.68701 1.37813 1.44123 1.50131 2.41569 3.11600 3.24857 3.35026 3.54989 3.71110 4.38078 4.42902 4.47737 4.56152 4.63976 4.70457 4.75547 4.92260 5.00717 5.06848 5.07916 5.21490 5.41390 5.53192 5.65132 5.69825 5.80449 6.55750 7.01637 7.22477 7.76780 8.42202 9.08241 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.020110 C = 0.013688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.452888 B = 1392.032569 C = 2045.096286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.004 3.996 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.271 4.271 8 H 0.048 0.952 9 N -0.534 5.534 10 C 0.104 3.896 11 C -0.176 4.176 12 C -0.215 4.215 13 C 0.149 3.851 14 H 0.095 0.905 15 C -0.167 4.167 16 C -0.195 4.195 17 H 0.097 0.903 18 C 0.136 3.864 19 O -0.595 6.595 20 H 0.251 0.749 21 H 0.111 0.889 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -4.747 1.743 6.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.198 4.198 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.402 4.402 8 H 0.065 0.935 9 N -0.249 5.249 10 C -0.004 4.004 11 C -0.214 4.214 12 C -0.255 4.255 13 C 0.040 3.960 14 H 0.113 0.887 15 C -0.205 4.205 16 C -0.217 4.217 17 H 0.115 0.885 18 C 0.059 3.941 19 O -0.403 6.403 20 H 0.061 0.939 21 H 0.129 0.871 22 H 0.092 0.908 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.501 -4.737 1.818 6.165 hybrid contribution 0.555 1.479 -0.318 1.612 sum 4.057 -3.258 1.500 5.415 Atomic orbital electron populations 1.70248 1.06516 1.26300 1.49688 1.26029 0.95470 1.01070 0.97196 0.85870 0.79804 0.81716 0.77100 1.18831 1.21695 1.21226 1.18719 0.91075 0.84819 1.45540 0.93479 1.42853 1.57500 1.10493 1.14095 1.21541 1.02512 0.91668 0.84640 1.23000 0.93222 1.02342 1.02790 1.23219 0.95093 1.01017 1.06185 1.20950 0.94726 0.98218 0.82100 0.88741 1.23199 0.98887 0.95377 1.03059 1.22847 0.92732 1.05054 1.01093 0.88518 1.21298 0.91748 0.99091 0.82004 1.86374 1.28237 1.95339 1.30309 0.93908 0.87143 0.90768 0.87278 0.88441 0.92746 0.91112 0.89269 0.94138 0.94542 0.76190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.21 11.52 21.65 0.25 -48.96 16 2 C 0.00 0.19 3.14 84.86 0.27 0.46 16 3 Si 0.93 42.40 29.45 68.60 2.02 44.42 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.27 -13.78 5.31 84.04 0.45 -13.33 16 8 H 0.05 2.46 7.46 -2.91 -0.02 2.44 16 9 N -0.53 -25.17 2.66 -654.22 -1.74 -26.91 16 10 C 0.10 4.24 6.61 44.99 0.30 4.54 16 11 C -0.18 -6.59 9.83 30.62 0.30 -6.29 16 12 C -0.21 -8.60 10.36 30.62 0.32 -8.28 16 13 C 0.15 6.70 6.27 44.99 0.28 6.98 16 14 H 0.09 4.01 8.14 -2.39 -0.02 3.99 16 15 C -0.17 -7.74 8.13 30.60 0.25 -7.49 16 16 C -0.20 -8.17 6.06 -10.79 -0.07 -8.24 16 17 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 18 C 0.14 5.45 6.10 71.98 0.44 5.89 16 19 O -0.59 -21.01 13.66 -148.98 -2.04 -23.05 16 20 H 0.25 13.62 8.32 -92.71 -0.77 12.84 16 21 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 22 H 0.07 3.15 6.82 -2.39 -0.02 3.13 16 23 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 24 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 25 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.09 4.64 4.64 -2.39 -0.01 4.63 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.62 6.66 -2.38 -0.02 1.60 16 30 H 0.39 9.61 9.12 -74.06 -0.68 8.94 16 Total: -1.00 -58.65 248.57 1.48 -57.17 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.45 Total: 23.09 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 2.53 Total: -25.76 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.49 Total: -75.87 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -2.04 Total: -23.05 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.02 Total: 44.42 kcal Total: -58.65 1.48 -57.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379326173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.927 kcal (2) G-P(sol) polarization free energy of solvation -58.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds