Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48499 * 109.46623 * 239.99807 * 3 2 1 5 5 H 1.48491 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47161 * 120.00365 * 3 2 1 7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46897 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46684 * 179.97438 * 12 11 10 14 14 N 1.28884 * 125.44412 * 90.00634 * 13 12 11 15 15 C 1.31046 * 107.90957 * 179.97438 * 14 13 12 16 16 N 1.33314 * 106.90690 * 359.97438 * 15 14 13 17 17 N 1.28786 * 125.45114 * 269.69462 * 13 12 11 18 18 H 0.96997 * 120.00478 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47155 * 60.00217 * 9 7 2 20 20 H 1.08997 * 109.47111 * 300.00138 * 9 7 2 21 21 H 1.00902 * 111.00533 * 56.04452 * 10 9 7 22 22 H 1.09000 * 109.47033 * 300.00113 * 11 10 9 23 23 H 1.09001 * 109.46544 * 60.00058 * 11 10 9 24 24 H 1.09000 * 109.47486 * 299.99976 * 12 11 10 25 25 H 1.09001 * 109.47362 * 60.00699 * 12 11 10 26 26 H 1.08009 * 126.54325 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 6 2.5306 -6.0429 -0.0018 13 7 1.8323 -7.3308 -0.0018 14 7 1.4757 -7.9877 -1.0518 15 6 0.8806 -9.0864 -0.6569 16 7 0.8888 -9.0742 0.6761 17 7 1.4815 -7.9903 1.0473 18 1 -0.4851 0.8400 -0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8408 -3.5486 0.7808 22 1 0.8804 -4.9818 0.8886 23 1 0.8810 -4.9812 -0.8914 24 1 3.1555 -5.9680 -0.8917 25 1 3.1555 -5.9689 0.8883 26 1 0.4633 -9.8551 -1.2906 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379476005.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = 126.179939 kcal Electronic energy + Delta-G solvation = -11738.139926 eV Core-core repulsion = 9469.181416 eV Total energy + Delta-G solvation = -2268.958510 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.28625 -36.57877 -34.50174 -33.08932 -32.46416 -29.65238 -26.44964 -23.91442 -23.76704 -21.84334 -21.54835 -17.72093 -17.19316 -16.37293 -15.72402 -15.14023 -14.55919 -14.05190 -13.62973 -13.13248 -12.76940 -12.23249 -12.00760 -11.43184 -11.20859 -10.98503 -10.94954 -10.80470 -10.74540 -10.34392 -10.01147 -9.33556 -8.58514 -7.62773 -6.12603 -4.16095 1.27150 1.98616 2.23800 3.28393 3.32822 3.35275 4.11494 4.34581 4.42588 4.74271 4.93518 5.17857 5.23373 5.29139 5.64048 5.69629 5.94504 5.96038 6.24539 7.01748 7.22506 7.60824 7.96498 8.11573 8.37618 8.39339 8.91595 9.49326 10.98425 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.109954 B = 0.005617 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.590324 B = 4983.411650 C = 5063.887829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.196 3.804 10 N -0.682 5.682 11 C 0.046 3.954 12 C 0.127 3.873 13 N -0.127 5.127 14 N -0.307 5.307 15 C 0.134 3.866 16 N -0.296 5.296 17 N -0.063 5.063 18 H 0.264 0.736 19 H 0.031 0.969 20 H -0.009 1.009 21 H 0.333 0.667 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.124 0.876 25 H 0.115 0.885 26 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -12.663 -0.732 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.314 5.314 11 C -0.085 4.085 12 C 0.007 3.993 13 N -0.041 5.041 14 N -0.157 5.157 15 C -0.169 4.169 16 N -0.166 5.166 17 N -0.056 5.056 18 H 0.073 0.927 19 H 0.049 0.951 20 H 0.009 0.991 21 H 0.150 0.850 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.143 0.857 25 H 0.133 0.867 26 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.730 -12.191 -0.870 12.778 hybrid contribution -0.192 0.603 0.339 0.718 sum 3.538 -11.588 -0.530 12.128 Atomic orbital electron populations 1.69947 1.06148 1.27173 1.50278 1.25000 0.94908 0.99507 0.95086 0.86488 0.79390 0.82392 0.78718 1.20060 1.21281 1.20164 1.21089 0.93548 0.89967 1.51227 0.91767 1.19598 0.90426 0.86803 0.96232 1.60681 1.21425 1.00197 1.49094 1.22174 0.94764 0.89773 1.01832 1.22480 0.95005 0.74711 1.07102 1.50385 1.35390 1.17812 1.00485 1.74759 1.17306 1.07401 1.16220 1.27360 1.01105 0.96926 0.91514 1.75860 1.16483 1.12374 1.11915 1.78995 1.11287 1.00758 1.14603 0.92668 0.95099 0.99145 0.85004 0.94828 0.90374 0.85750 0.86702 0.75057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.52 -14.21 9.32 -34.44 -0.32 -14.53 15 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 9 C 0.20 4.92 5.44 -4.97 -0.03 4.89 15 10 N -0.68 -13.26 6.49 -115.06 -0.75 -14.00 15 11 C 0.05 0.75 6.01 -3.82 -0.02 0.73 15 12 C 0.13 1.60 6.87 -4.04 -0.03 1.57 15 13 N -0.13 -1.80 4.00 -10.67 -0.04 -1.84 15 14 N -0.31 -4.23 12.13 29.34 0.36 -3.88 15 15 C 0.13 1.60 13.26 -91.58 -1.21 0.38 15 16 N -0.30 -4.29 12.50 29.34 0.37 -3.92 15 17 N -0.06 -0.96 13.25 60.35 0.80 -0.16 15 18 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 19 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 20 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 15 21 H 0.33 5.91 8.72 -39.29 -0.34 5.57 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 24 H 0.12 1.42 8.14 -51.93 -0.42 1.00 15 25 H 0.11 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.23 1.59 8.06 -52.48 -0.42 1.17 15 LS Contribution 240.62 15.07 3.63 3.63 Total: -1.00 -31.15 240.62 -4.48 -35.63 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.85 Total: -0.54 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.71 Total: -5.46 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 1.47 Total: -49.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.15 -4.48 -35.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379476005.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.810 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds