Wall clock time and date at job start Mon Mar 30 2020 02:06:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86804 * 119.99507 * 2 1
4 4 H 1.48499 * 109.46623 * 239.99807 * 3 2 1
5 5 H 1.48491 * 109.47047 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47161 * 120.00365 * 3 2 1
7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1
9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1
10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2
11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7
12 12 C 1.52999 * 109.46897 * 179.97438 * 11 10 9
13 13 N 1.46506 * 109.46684 * 179.97438 * 12 11 10
14 14 N 1.28884 * 125.44412 * 90.00634 * 13 12 11
15 15 C 1.31046 * 107.90957 * 179.97438 * 14 13 12
16 16 N 1.33314 * 106.90690 * 359.97438 * 15 14 13
17 17 N 1.28786 * 125.45114 * 269.69462 * 13 12 11
18 18 H 0.96997 * 120.00478 * 0.02562 * 1 2 3
19 19 H 1.08995 * 109.47155 * 60.00217 * 9 7 2
20 20 H 1.08997 * 109.47111 * 300.00138 * 9 7 2
21 21 H 1.00902 * 111.00533 * 56.04452 * 10 9 7
22 22 H 1.09000 * 109.47033 * 300.00113 * 11 10 9
23 23 H 1.09001 * 109.46544 * 60.00058 * 11 10 9
24 24 H 1.09000 * 109.47486 * 299.99976 * 12 11 10
25 25 H 1.09001 * 109.47362 * 60.00699 * 12 11 10
26 26 H 1.08009 * 126.54325 * 179.97438 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2840 2.7464 -0.0006
6 1 3.1029 1.6966 1.2124
7 6 2.0047 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 7 2.2058 -3.6156 -0.0005
11 6 1.5056 -4.9070 -0.0011
12 6 2.5306 -6.0429 -0.0018
13 7 1.8323 -7.3308 -0.0018
14 7 1.4757 -7.9877 -1.0518
15 6 0.8806 -9.0864 -0.6569
16 7 0.8888 -9.0742 0.6761
17 7 1.4815 -7.9903 1.0473
18 1 -0.4851 0.8400 -0.0004
19 1 0.6242 -2.5567 -0.8903
20 1 0.6248 -2.5571 0.8896
21 1 2.8408 -3.5486 0.7808
22 1 0.8804 -4.9818 0.8886
23 1 0.8810 -4.9812 -0.8914
24 1 3.1555 -5.9680 -0.8917
25 1 3.1555 -5.9689 0.8883
26 1 0.4633 -9.8551 -1.2906
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379476005.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:06:14
Heat of formation + Delta-G solvation = 126.179939 kcal
Electronic energy + Delta-G solvation = -11738.139926 eV
Core-core repulsion = 9469.181416 eV
Total energy + Delta-G solvation = -2268.958510 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 197.097 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-44.28625 -36.57877 -34.50174 -33.08932 -32.46416 -29.65238 -26.44964 -23.91442
-23.76704 -21.84334 -21.54835 -17.72093 -17.19316 -16.37293 -15.72402 -15.14023
-14.55919 -14.05190 -13.62973 -13.13248 -12.76940 -12.23249 -12.00760 -11.43184
-11.20859 -10.98503 -10.94954 -10.80470 -10.74540 -10.34392 -10.01147 -9.33556
-8.58514 -7.62773 -6.12603 -4.16095 1.27150 1.98616 2.23800 3.28393
3.32822 3.35275 4.11494 4.34581 4.42588 4.74271 4.93518 5.17857
5.23373 5.29139 5.64048 5.69629 5.94504 5.96038 6.24539 7.01748
7.22506 7.60824 7.96498 8.11573 8.37618 8.39339 8.91595 9.49326
10.98425
Molecular weight = 197.10amu
Principal moments of inertia in cm(-1)
A = 0.109954 B = 0.005617 C = 0.005528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 254.590324 B = 4983.411650 C = 5063.887829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.057 3.943
3 Si 0.903 3.097
4 H -0.275 1.275
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.520 4.520
8 H 0.064 0.936
9 C 0.196 3.804
10 N -0.682 5.682
11 C 0.046 3.954
12 C 0.127 3.873
13 N -0.127 5.127
14 N -0.307 5.307
15 C 0.134 3.866
16 N -0.296 5.296
17 N -0.063 5.063
18 H 0.264 0.736
19 H 0.031 0.969
20 H -0.009 1.009
21 H 0.333 0.667
22 H 0.034 0.966
23 H 0.078 0.922
24 H 0.124 0.876
25 H 0.115 0.885
26 H 0.233 0.767
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.632 -12.663 -0.732 13.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.145 4.145
3 Si 0.730 3.270
4 H -0.201 1.201
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.558 4.558
8 H 0.082 0.918
9 C 0.069 3.931
10 N -0.314 5.314
11 C -0.085 4.085
12 C 0.007 3.993
13 N -0.041 5.041
14 N -0.157 5.157
15 C -0.169 4.169
16 N -0.166 5.166
17 N -0.056 5.056
18 H 0.073 0.927
19 H 0.049 0.951
20 H 0.009 0.991
21 H 0.150 0.850
22 H 0.052 0.948
23 H 0.096 0.904
24 H 0.143 0.857
25 H 0.133 0.867
26 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges 3.730 -12.191 -0.870 12.778
hybrid contribution -0.192 0.603 0.339 0.718
sum 3.538 -11.588 -0.530 12.128
Atomic orbital electron populations
1.69947 1.06148 1.27173 1.50278 1.25000 0.94908 0.99507 0.95086
0.86488 0.79390 0.82392 0.78718 1.20060 1.21281 1.20164 1.21089
0.93548 0.89967 1.51227 0.91767 1.19598 0.90426 0.86803 0.96232
1.60681 1.21425 1.00197 1.49094 1.22174 0.94764 0.89773 1.01832
1.22480 0.95005 0.74711 1.07102 1.50385 1.35390 1.17812 1.00485
1.74759 1.17306 1.07401 1.16220 1.27360 1.01105 0.96926 0.91514
1.75860 1.16483 1.12374 1.11915 1.78995 1.11287 1.00758 1.14603
0.92668 0.95099 0.99145 0.85004 0.94828 0.90374 0.85750 0.86702
0.75057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 15
2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15
3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15
4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15
5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15
6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15
7 C -0.52 -14.21 9.32 -34.44 -0.32 -14.53 15
8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15
9 C 0.20 4.92 5.44 -4.97 -0.03 4.89 15
10 N -0.68 -13.26 6.49 -115.06 -0.75 -14.00 15
11 C 0.05 0.75 6.01 -3.82 -0.02 0.73 15
12 C 0.13 1.60 6.87 -4.04 -0.03 1.57 15
13 N -0.13 -1.80 4.00 -10.67 -0.04 -1.84 15
14 N -0.31 -4.23 12.13 29.34 0.36 -3.88 15
15 C 0.13 1.60 13.26 -91.58 -1.21 0.38 15
16 N -0.30 -4.29 12.50 29.34 0.37 -3.92 15
17 N -0.06 -0.96 13.25 60.35 0.80 -0.16 15
18 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15
19 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15
20 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 15
21 H 0.33 5.91 8.72 -39.29 -0.34 5.57 15
22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15
23 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15
24 H 0.12 1.42 8.14 -51.93 -0.42 1.00 15
25 H 0.11 1.20 8.14 -51.93 -0.42 0.78 15
26 H 0.23 1.59 8.06 -52.48 -0.42 1.17 15
LS Contribution 240.62 15.07 3.63 3.63
Total: -1.00 -31.15 240.62 -4.48 -35.63
By element:
Atomic # 1 Polarization: 2.31 SS G_CDS: -2.85 Total: -0.54 kcal
Atomic # 6 Polarization: -3.75 SS G_CDS: -1.71 Total: -5.46 kcal
Atomic # 7 Polarization: -50.85 SS G_CDS: 1.47 Total: -49.38 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 3.63 Total: 3.63 kcal
Total: -31.15 -4.48 -35.63 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379476005.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 161.810 kcal
(2) G-P(sol) polarization free energy of solvation -31.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.482 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) 126.180 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds