Wall clock time and date at job start Mon Mar 30 2020 02:06:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86804 * 119.99507 * 2 1
4 4 H 1.48499 * 109.46623 * 239.99807 * 3 2 1
5 5 H 1.48491 * 109.47047 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47161 * 120.00365 * 3 2 1
7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1
9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1
10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2
11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7
12 12 C 1.52999 * 109.46897 * 179.97438 * 11 10 9
13 13 N 1.46506 * 109.46684 * 179.97438 * 12 11 10
14 14 N 1.28884 * 125.44412 * 90.00634 * 13 12 11
15 15 C 1.31046 * 107.90957 * 179.97438 * 14 13 12
16 16 N 1.33314 * 106.90690 * 359.97438 * 15 14 13
17 17 N 1.28786 * 125.45114 * 269.69462 * 13 12 11
18 18 H 0.96997 * 120.00478 * 0.02562 * 1 2 3
19 19 H 1.08995 * 109.47155 * 60.00217 * 9 7 2
20 20 H 1.08997 * 109.47111 * 300.00138 * 9 7 2
21 21 H 1.00902 * 111.00533 * 56.04452 * 10 9 7
22 22 H 1.09000 * 109.47033 * 300.00113 * 11 10 9
23 23 H 1.09001 * 109.46544 * 60.00058 * 11 10 9
24 24 H 1.09000 * 109.47486 * 299.99976 * 12 11 10
25 25 H 1.09001 * 109.47362 * 60.00699 * 12 11 10
26 26 H 1.08009 * 126.54325 * 179.97438 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2840 2.7464 -0.0006
6 1 3.1029 1.6966 1.2124
7 6 2.0047 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 7 2.2058 -3.6156 -0.0005
11 6 1.5056 -4.9070 -0.0011
12 6 2.5306 -6.0429 -0.0018
13 7 1.8323 -7.3308 -0.0018
14 7 1.4757 -7.9877 -1.0518
15 6 0.8806 -9.0864 -0.6569
16 7 0.8888 -9.0742 0.6761
17 7 1.4815 -7.9903 1.0473
18 1 -0.4851 0.8400 -0.0004
19 1 0.6242 -2.5567 -0.8903
20 1 0.6248 -2.5571 0.8896
21 1 2.8408 -3.5486 0.7808
22 1 0.8804 -4.9818 0.8886
23 1 0.8810 -4.9812 -0.8914
24 1 3.1555 -5.9680 -0.8917
25 1 3.1555 -5.9689 0.8883
26 1 0.4633 -9.8551 -1.2906
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379476005.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:06:14
Heat of formation + Delta-G solvation = 102.746161 kcal
Electronic energy + Delta-G solvation = -11739.156091 eV
Core-core repulsion = 9469.181416 eV
Total energy + Delta-G solvation = -2269.974675 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 197.097 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-45.33429 -37.99409 -35.93148 -34.54444 -33.99823 -31.10642 -28.21995 -25.24701
-24.91649 -23.51362 -22.92957 -18.84540 -18.69150 -17.98997 -16.95609 -16.70791
-16.15686 -15.40115 -14.85822 -14.74035 -14.31687 -13.95356 -13.26782 -13.10761
-12.72073 -12.68168 -12.39839 -12.11463 -12.01308 -11.96581 -11.49591 -11.23590
-10.67671 -9.34216 -8.24567 -6.36382 0.17484 0.95172 1.26341 1.43413
1.46535 1.54533 2.39828 3.09859 3.20949 3.38786 3.50291 3.73294
3.96495 4.17146 4.46079 4.62207 4.80688 4.86228 4.99915 5.15720
5.19876 5.56488 5.93767 6.26493 6.60098 6.83434 7.34216 7.34963
8.87060
Molecular weight = 197.10amu
Principal moments of inertia in cm(-1)
A = 0.109954 B = 0.005617 C = 0.005528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 254.590324 B = 4983.411650 C = 5063.887829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C 0.000 4.000
3 Si 0.975 3.025
4 H -0.267 1.267
5 H -0.286 1.286
6 H -0.264 1.264
7 C -0.537 4.537
8 H 0.073 0.927
9 C 0.208 3.792
10 N -0.674 5.674
11 C 0.054 3.946
12 C 0.136 3.864
13 N -0.130 5.130
14 N -0.324 5.324
15 C 0.146 3.854
16 N -0.315 5.315
17 N -0.082 5.082
18 H 0.265 0.735
19 H 0.001 0.999
20 H -0.036 1.036
21 H 0.347 0.653
22 H 0.024 0.976
23 H 0.063 0.937
24 H 0.141 0.859
25 H 0.140 0.860
26 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.990 -13.013 -0.970 13.970
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.198 4.198
3 Si 0.799 3.201
4 H -0.191 1.191
5 H -0.212 1.212
6 H -0.189 1.189
7 C -0.575 4.575
8 H 0.091 0.909
9 C 0.080 3.920
10 N -0.306 5.306
11 C -0.078 4.078
12 C 0.017 3.983
13 N -0.044 5.044
14 N -0.174 5.174
15 C -0.156 4.156
16 N -0.185 5.185
17 N -0.075 5.075
18 H 0.074 0.926
19 H 0.019 0.981
20 H -0.018 1.018
21 H 0.165 0.835
22 H 0.042 0.958
23 H 0.081 0.919
24 H 0.159 0.841
25 H 0.158 0.842
26 H 0.293 0.707
Dipole moment (debyes) X Y Z Total
from point charges 5.111 -12.568 -1.098 13.612
hybrid contribution -0.664 0.609 0.390 0.981
sum 4.447 -11.960 -0.708 12.779
Atomic orbital electron populations
1.70087 1.07961 1.28203 1.51354 1.25989 0.95755 1.03586 0.94498
0.85342 0.78028 0.77372 0.79315 1.19142 1.21179 1.18859 1.21513
0.94151 0.90982 1.50859 0.90904 1.19234 0.90606 0.88604 0.93563
1.60445 1.20351 1.00048 1.49801 1.22053 0.95507 0.89626 1.00609
1.22411 0.93636 0.72969 1.09290 1.50445 1.35532 1.17999 1.00428
1.74773 1.18073 1.08184 1.16378 1.28265 0.99378 0.96937 0.91056
1.75847 1.16964 1.12414 1.13317 1.78973 1.11965 1.01382 1.15223
0.92586 0.98072 1.01797 0.83511 0.95825 0.91886 0.84081 0.84165
0.70714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.78 13.29 21.45 0.28 -55.50 15
2 C 0.00 0.00 5.46 84.65 0.46 0.47 15
3 Si 0.98 42.95 29.54 68.60 2.03 44.97 15
4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15
5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15
6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15
7 C -0.54 -29.34 9.32 25.60 0.24 -29.11 15
8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 15
9 C 0.21 10.67 5.44 85.56 0.47 11.13 15
10 N -0.67 -25.93 6.49 -517.92 -3.36 -29.29 15
11 C 0.05 1.73 6.01 86.30 0.52 2.24 15
12 C 0.14 3.19 6.87 86.38 0.59 3.79 15
13 N -0.13 -3.48 4.00 -187.68 -0.75 -4.24 15
14 N -0.32 -8.36 12.13 -61.09 -0.74 -9.10 15
15 C 0.15 3.16 13.26 180.68 2.40 5.55 15
16 N -0.32 -8.67 12.50 -61.10 -0.76 -9.43 15
17 N -0.08 -2.40 13.25 37.02 0.49 -1.91 15
18 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15
19 H 0.00 0.06 8.14 -2.39 -0.02 0.05 15
20 H -0.04 -1.99 8.14 -2.39 -0.02 -2.01 15
21 H 0.35 11.87 8.72 -89.69 -0.78 11.09 15
22 H 0.02 0.81 8.14 -2.39 -0.02 0.79 15
23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15
24 H 0.14 2.88 8.14 -2.39 -0.02 2.86 15
25 H 0.14 2.59 8.14 -2.39 -0.02 2.57 15
26 H 0.28 2.84 8.06 -2.91 -0.02 2.81 15
Total: -1.00 -67.12 240.62 2.26 -64.85
By element:
Atomic # 1 Polarization: 5.16 SS G_CDS: 0.40 Total: 5.57 kcal
Atomic # 6 Polarization: -10.60 SS G_CDS: 4.67 Total: -5.92 kcal
Atomic # 7 Polarization: -104.63 SS G_CDS: -4.84 Total: -109.47 kcal
Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal
Total: -67.12 2.26 -64.85 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379476005.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 167.600 kcal
(2) G-P(sol) polarization free energy of solvation -67.118 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) 102.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds