Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48499 * 109.46623 * 239.99807 * 3 2 1 5 5 H 1.48491 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47161 * 120.00365 * 3 2 1 7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46897 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46684 * 179.97438 * 12 11 10 14 14 N 1.28884 * 125.44412 * 90.00634 * 13 12 11 15 15 C 1.31046 * 107.90957 * 179.97438 * 14 13 12 16 16 N 1.33314 * 106.90690 * 359.97438 * 15 14 13 17 17 N 1.28786 * 125.45114 * 269.69462 * 13 12 11 18 18 H 0.96997 * 120.00478 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47155 * 60.00217 * 9 7 2 20 20 H 1.08997 * 109.47111 * 300.00138 * 9 7 2 21 21 H 1.00902 * 111.00533 * 56.04452 * 10 9 7 22 22 H 1.09000 * 109.47033 * 300.00113 * 11 10 9 23 23 H 1.09001 * 109.46544 * 60.00058 * 11 10 9 24 24 H 1.09000 * 109.47486 * 299.99976 * 12 11 10 25 25 H 1.09001 * 109.47362 * 60.00699 * 12 11 10 26 26 H 1.08009 * 126.54325 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 6 2.5306 -6.0429 -0.0018 13 7 1.8323 -7.3308 -0.0018 14 7 1.4757 -7.9877 -1.0518 15 6 0.8806 -9.0864 -0.6569 16 7 0.8888 -9.0742 0.6761 17 7 1.4815 -7.9903 1.0473 18 1 -0.4851 0.8400 -0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8408 -3.5486 0.7808 22 1 0.8804 -4.9818 0.8886 23 1 0.8810 -4.9812 -0.8914 24 1 3.1555 -5.9680 -0.8917 25 1 3.1555 -5.9689 0.8883 26 1 0.4633 -9.8551 -1.2906 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379476005.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = 102.746161 kcal Electronic energy + Delta-G solvation = -11739.156091 eV Core-core repulsion = 9469.181416 eV Total energy + Delta-G solvation = -2269.974675 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.33429 -37.99409 -35.93148 -34.54444 -33.99823 -31.10642 -28.21995 -25.24701 -24.91649 -23.51362 -22.92957 -18.84540 -18.69150 -17.98997 -16.95609 -16.70791 -16.15686 -15.40115 -14.85822 -14.74035 -14.31687 -13.95356 -13.26782 -13.10761 -12.72073 -12.68168 -12.39839 -12.11463 -12.01308 -11.96581 -11.49591 -11.23590 -10.67671 -9.34216 -8.24567 -6.36382 0.17484 0.95172 1.26341 1.43413 1.46535 1.54533 2.39828 3.09859 3.20949 3.38786 3.50291 3.73294 3.96495 4.17146 4.46079 4.62207 4.80688 4.86228 4.99915 5.15720 5.19876 5.56488 5.93767 6.26493 6.60098 6.83434 7.34216 7.34963 8.87060 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.109954 B = 0.005617 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.590324 B = 4983.411650 C = 5063.887829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.208 3.792 10 N -0.674 5.674 11 C 0.054 3.946 12 C 0.136 3.864 13 N -0.130 5.130 14 N -0.324 5.324 15 C 0.146 3.854 16 N -0.315 5.315 17 N -0.082 5.082 18 H 0.265 0.735 19 H 0.001 0.999 20 H -0.036 1.036 21 H 0.347 0.653 22 H 0.024 0.976 23 H 0.063 0.937 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -13.013 -0.970 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.091 0.909 9 C 0.080 3.920 10 N -0.306 5.306 11 C -0.078 4.078 12 C 0.017 3.983 13 N -0.044 5.044 14 N -0.174 5.174 15 C -0.156 4.156 16 N -0.185 5.185 17 N -0.075 5.075 18 H 0.074 0.926 19 H 0.019 0.981 20 H -0.018 1.018 21 H 0.165 0.835 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.159 0.841 25 H 0.158 0.842 26 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 5.111 -12.568 -1.098 13.612 hybrid contribution -0.664 0.609 0.390 0.981 sum 4.447 -11.960 -0.708 12.779 Atomic orbital electron populations 1.70087 1.07961 1.28203 1.51354 1.25989 0.95755 1.03586 0.94498 0.85342 0.78028 0.77372 0.79315 1.19142 1.21179 1.18859 1.21513 0.94151 0.90982 1.50859 0.90904 1.19234 0.90606 0.88604 0.93563 1.60445 1.20351 1.00048 1.49801 1.22053 0.95507 0.89626 1.00609 1.22411 0.93636 0.72969 1.09290 1.50445 1.35532 1.17999 1.00428 1.74773 1.18073 1.08184 1.16378 1.28265 0.99378 0.96937 0.91056 1.75847 1.16964 1.12414 1.13317 1.78973 1.11965 1.01382 1.15223 0.92586 0.98072 1.01797 0.83511 0.95825 0.91886 0.84081 0.84165 0.70714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 13.29 21.45 0.28 -55.50 15 2 C 0.00 0.00 5.46 84.65 0.46 0.47 15 3 Si 0.98 42.95 29.54 68.60 2.03 44.97 15 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.54 -29.34 9.32 25.60 0.24 -29.11 15 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 15 9 C 0.21 10.67 5.44 85.56 0.47 11.13 15 10 N -0.67 -25.93 6.49 -517.92 -3.36 -29.29 15 11 C 0.05 1.73 6.01 86.30 0.52 2.24 15 12 C 0.14 3.19 6.87 86.38 0.59 3.79 15 13 N -0.13 -3.48 4.00 -187.68 -0.75 -4.24 15 14 N -0.32 -8.36 12.13 -61.09 -0.74 -9.10 15 15 C 0.15 3.16 13.26 180.68 2.40 5.55 15 16 N -0.32 -8.67 12.50 -61.10 -0.76 -9.43 15 17 N -0.08 -2.40 13.25 37.02 0.49 -1.91 15 18 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 19 H 0.00 0.06 8.14 -2.39 -0.02 0.05 15 20 H -0.04 -1.99 8.14 -2.39 -0.02 -2.01 15 21 H 0.35 11.87 8.72 -89.69 -0.78 11.09 15 22 H 0.02 0.81 8.14 -2.39 -0.02 0.79 15 23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.14 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.14 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.28 2.84 8.06 -2.91 -0.02 2.81 15 Total: -1.00 -67.12 240.62 2.26 -64.85 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 0.40 Total: 5.57 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 4.67 Total: -5.92 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -4.84 Total: -109.47 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.12 2.26 -64.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379476005.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.600 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds