Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00189 * 2 1 4 4 H 1.48501 * 109.47323 * 269.99887 * 3 2 1 5 5 H 1.48499 * 109.47171 * 30.00453 * 3 2 1 6 6 H 1.48503 * 109.46836 * 150.00128 * 3 2 1 7 7 C 1.37875 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00852 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99877 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99859 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47001 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 H 0.97005 * 120.00083 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.47143 * 60.00124 * 9 7 2 20 20 H 1.09000 * 109.47028 * 300.00632 * 9 7 2 21 21 H 1.09002 * 109.47104 * 59.99982 * 11 10 9 22 22 H 1.08996 * 109.47156 * 299.99863 * 11 10 9 23 23 H 1.09002 * 109.47279 * 60.00000 * 12 11 10 24 24 H 1.08995 * 109.47424 * 300.00178 * 12 11 10 25 25 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 26 26 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0004 13 7 2.0178 -7.2788 -0.0004 14 6 2.2289 -8.2718 -0.8816 15 7 1.4779 -9.2864 -0.5377 16 6 0.7769 -8.9803 0.5533 17 7 1.0692 -7.7594 0.9170 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8896 21 1 0.9451 -4.9822 -0.8914 22 1 0.9446 -4.9827 0.8886 23 1 3.2674 -5.8493 0.8900 24 1 3.2687 -5.8491 -0.8899 25 1 2.9007 -8.2377 -1.7267 26 1 0.0768 -9.6335 1.0531 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385268086.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = 17.573932 kcal Electronic energy + Delta-G solvation = -11705.394183 eV Core-core repulsion = 9399.433412 eV Total energy + Delta-G solvation = -2305.960771 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.00726 -38.87926 -35.59317 -34.76574 -32.20987 -30.74456 -28.88633 -25.00453 -24.40049 -22.90863 -22.31769 -18.73722 -18.41743 -17.35708 -17.03223 -16.60103 -16.18166 -15.76549 -15.20858 -14.94532 -14.46151 -13.99858 -13.26738 -12.97263 -12.90102 -12.67399 -12.36266 -12.06456 -11.38041 -11.05686 -10.96437 -10.83118 -10.70653 -10.38694 -8.35857 -6.49626 0.67676 1.27240 1.40752 1.43305 1.55616 2.00105 2.32801 2.97822 2.98616 3.52048 3.64007 3.95726 4.04222 4.17978 4.28442 4.59676 4.67985 4.79948 5.07398 5.23245 5.47186 5.50400 5.87095 5.87932 6.38256 6.70907 7.09452 7.22295 8.76607 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.109704 B = 0.005668 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.170336 B = 4938.853370 C = 5079.345741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.210 3.790 10 O -0.399 6.399 11 C 0.053 3.947 12 C 0.144 3.856 13 N -0.383 5.383 14 C 0.267 3.733 15 N -0.575 5.575 16 C 0.195 3.805 17 N -0.363 5.363 18 H 0.272 0.728 19 H -0.011 1.011 20 H -0.016 1.016 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.101 0.899 24 H 0.146 0.854 25 H 0.265 0.735 26 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -12.902 -1.941 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.588 4.588 8 H 0.088 0.912 9 C 0.135 3.865 10 O -0.318 6.318 11 C -0.025 4.025 12 C 0.023 3.977 13 N -0.175 5.175 14 C -0.028 4.028 15 N -0.303 5.303 16 C -0.108 4.108 17 N -0.191 5.191 18 H 0.080 0.920 19 H 0.007 0.993 20 H 0.002 0.998 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.119 0.881 24 H 0.164 0.836 25 H 0.281 0.719 26 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 5.096 -12.617 -1.481 13.687 hybrid contribution -0.375 0.853 0.022 0.932 sum 4.721 -11.764 -1.459 12.759 Atomic orbital electron populations 1.70077 1.07948 1.28833 1.50235 1.26026 0.95967 1.03636 0.93748 0.85117 0.78349 0.76619 0.78938 1.19090 1.20171 1.18559 1.21396 0.94419 0.90397 1.52624 0.91247 1.19887 0.88564 0.84343 0.93665 1.87721 1.35270 1.13567 1.95280 1.22480 0.95682 0.84441 0.99881 1.21591 0.93386 0.75335 1.07429 1.50499 1.31934 1.13890 1.21174 1.27043 0.97528 0.82654 0.95593 1.70595 1.13510 1.29778 1.16442 1.26633 0.99085 0.92010 0.93044 1.78064 1.09951 1.14551 1.16507 0.91956 0.99334 0.99811 0.94113 0.94691 0.88126 0.83578 0.71926 0.74064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 15 2 C 0.00 0.28 5.46 84.66 0.46 0.74 15 3 Si 0.99 43.45 29.54 68.60 2.03 45.47 15 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.55 -32.18 9.43 25.60 0.24 -31.94 15 8 H 0.07 3.93 7.81 -2.91 -0.02 3.91 15 9 C 0.21 11.73 5.69 71.24 0.41 12.13 15 10 O -0.40 -18.62 10.33 -148.98 -1.54 -20.16 15 11 C 0.05 1.95 6.15 71.98 0.44 2.39 15 12 C 0.14 3.66 6.92 86.38 0.60 4.26 15 13 N -0.38 -9.82 3.69 -352.06 -1.30 -11.12 15 14 C 0.27 5.39 12.63 180.36 2.28 7.67 15 15 N -0.58 -14.03 11.19 -203.99 -2.28 -16.31 15 16 C 0.19 4.79 13.03 180.76 2.36 7.15 15 17 N -0.36 -10.82 12.56 -61.24 -0.77 -11.59 15 18 H 0.27 15.06 8.31 -92.70 -0.77 14.29 15 19 H -0.01 -0.65 8.14 -2.38 -0.02 -0.66 15 20 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 15 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.15 2.63 8.09 -2.39 -0.02 2.61 15 25 H 0.27 2.36 8.06 -2.91 -0.02 2.33 15 26 H 0.24 4.01 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -72.18 242.26 4.37 -67.81 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: 1.16 Total: -0.97 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.78 Total: 2.40 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -4.07 Total: -94.56 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.54 Total: -20.16 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.18 4.37 -67.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385268086.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.384 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds