Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48507 * 109.47177 * 270.00123 * 3 2 1 5 5 H 1.48500 * 109.47339 * 29.99805 * 3 2 1 6 6 H 1.48497 * 109.47175 * 150.00117 * 3 2 1 7 7 C 1.37876 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00228 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00149 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47315 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47176 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99988 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47255 * 180.02562 * 12 11 10 14 14 N 1.30274 * 126.28314 * 90.04129 * 13 12 11 15 15 N 1.28674 * 109.37972 * 179.97438 * 14 13 12 16 16 C 1.30274 * 109.37802 * 359.97438 * 15 14 13 17 17 O 1.34356 * 107.43917 * 0.02562 * 16 15 14 18 18 H 0.96998 * 120.00286 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.46990 * 59.99651 * 9 7 2 20 20 H 1.09009 * 109.46788 * 300.00068 * 9 7 2 21 21 H 1.09006 * 109.47361 * 60.00041 * 10 9 7 22 22 H 1.08998 * 109.47183 * 300.00123 * 10 9 7 23 23 H 1.00905 * 110.99873 * 56.05184 * 11 10 9 24 24 H 1.08999 * 109.47140 * 60.00759 * 12 11 10 25 25 H 1.09001 * 109.47305 * 300.00541 * 12 11 10 26 26 H 1.08010 * 126.27801 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6365 0.0009 12 6 6.0170 -4.0079 0.0014 13 6 7.5235 -3.9678 0.0020 14 7 8.2937 -3.9478 1.0524 15 7 9.5246 -3.9153 0.6788 16 6 9.5813 -3.9140 -0.6227 17 8 8.3187 -3.9469 -1.0808 18 1 -0.4850 0.8400 0.0004 19 1 3.8745 -0.6800 0.8910 20 1 3.8752 -0.6804 -0.8889 21 1 3.6586 -3.1502 -0.8893 22 1 3.6579 -3.1506 0.8907 23 1 5.8522 -2.1105 0.7824 24 1 5.6676 -4.5316 -0.8884 25 1 5.6675 -4.5310 0.8916 26 1 10.4788 -3.8908 -1.2233 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393317016.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = 36.725615 kcal Electronic energy + Delta-G solvation = -11727.227435 eV Core-core repulsion = 9422.097143 eV Total energy + Delta-G solvation = -2305.130291 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.29471 -36.54842 -36.23647 -33.24872 -31.78990 -29.83307 -26.58564 -23.83689 -23.66582 -22.12581 -20.55201 -17.74299 -17.39032 -16.79070 -16.12921 -15.33042 -14.78467 -14.46871 -13.76177 -12.98151 -12.81655 -12.50123 -12.42660 -11.95103 -11.41681 -11.11432 -11.07308 -10.29924 -10.13396 -9.85174 -9.72979 -9.28926 -8.58005 -8.28955 -6.08536 -4.07818 1.06485 2.25335 2.31837 3.30654 3.37955 3.42350 3.79764 4.35389 4.42829 4.58857 4.90896 5.16228 5.26007 5.38479 5.42024 5.58891 6.00169 6.07629 6.63005 6.88293 7.25927 7.36132 7.51263 7.76296 8.18082 8.46782 8.94577 9.53335 11.04546 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.072755 B = 0.006265 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.758281 B = 4468.547137 C = 4670.118192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.691 5.691 12 C 0.148 3.852 13 C 0.186 3.814 14 N -0.291 5.291 15 N -0.295 5.295 16 C 0.136 3.864 17 O -0.220 6.220 18 H 0.264 0.736 19 H 0.016 0.984 20 H 0.022 0.978 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.345 0.655 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 -7.372 -2.257 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.053 4.053 11 N -0.324 5.324 12 C 0.018 3.982 13 C -0.026 4.026 14 N -0.139 5.139 15 N -0.141 5.141 16 C -0.095 4.095 17 O -0.097 6.097 18 H 0.074 0.926 19 H 0.034 0.966 20 H 0.041 0.959 21 H 0.090 0.910 22 H 0.050 0.950 23 H 0.163 0.837 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 15.933 -7.186 -1.708 17.562 hybrid contribution 0.046 0.676 -0.426 0.800 sum 15.980 -6.511 -2.134 17.387 Atomic orbital electron populations 1.69908 1.06316 1.27026 1.50815 1.24997 0.94741 0.99236 0.94369 0.86738 0.80292 0.83413 0.78592 1.20218 1.21420 1.18984 1.21022 0.89125 0.94631 1.51434 0.90947 1.19559 0.96861 0.91387 0.97017 1.22052 0.82080 1.00905 1.00279 1.60687 1.11171 1.09971 1.50580 1.20408 0.79457 0.94108 1.04250 1.28238 0.97638 0.97566 0.79168 1.74433 0.95980 1.17887 1.25595 1.74348 1.12706 1.16548 1.10485 1.29661 0.86972 1.00254 0.92604 1.84868 1.17704 1.68589 1.38532 0.92636 0.96605 0.95945 0.91034 0.95002 0.83695 0.87660 0.90204 0.72447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 15 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 15 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 15 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 15 10 C 0.07 1.38 5.62 -3.83 -0.02 1.36 15 11 N -0.69 -11.03 6.49 -115.06 -0.75 -11.77 15 12 C 0.15 1.90 6.31 -4.98 -0.03 1.87 15 13 C 0.19 2.52 7.99 -12.94 -0.10 2.42 15 14 N -0.29 -4.41 12.22 32.55 0.40 -4.01 15 15 N -0.29 -4.05 12.22 29.42 0.36 -3.69 15 16 C 0.14 1.36 13.37 52.10 0.70 2.05 15 17 O -0.22 -2.70 10.87 5.40 0.06 -2.64 15 18 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 19 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 15 20 H 0.02 0.53 7.57 -51.92 -0.39 0.14 15 21 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.35 5.50 8.72 -39.29 -0.34 5.16 15 24 H 0.11 1.18 8.14 -51.93 -0.42 0.75 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.26 0.99 8.06 -52.48 -0.42 0.57 15 LS Contribution 237.13 15.07 3.57 3.57 Total: -1.00 -32.73 237.13 -3.07 -35.81 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -2.81 Total: -1.72 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.01 Total: -5.76 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.78 Total: -46.26 kcal Atomic # 8 Polarization: -2.70 SS G_CDS: 0.06 Total: -2.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.73 -3.07 -35.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393317016.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.531 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds