Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48507 * 109.47177 * 270.00123 * 3 2 1 5 5 H 1.48500 * 109.47339 * 29.99805 * 3 2 1 6 6 H 1.48497 * 109.47175 * 150.00117 * 3 2 1 7 7 C 1.37876 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00228 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00149 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47315 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47176 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99988 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47255 * 180.02562 * 12 11 10 14 14 N 1.30274 * 126.28314 * 90.04129 * 13 12 11 15 15 N 1.28674 * 109.37972 * 179.97438 * 14 13 12 16 16 C 1.30274 * 109.37802 * 359.97438 * 15 14 13 17 17 O 1.34356 * 107.43917 * 0.02562 * 16 15 14 18 18 H 0.96998 * 120.00286 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.46990 * 59.99651 * 9 7 2 20 20 H 1.09009 * 109.46788 * 300.00068 * 9 7 2 21 21 H 1.09006 * 109.47361 * 60.00041 * 10 9 7 22 22 H 1.08998 * 109.47183 * 300.00123 * 10 9 7 23 23 H 1.00905 * 110.99873 * 56.05184 * 11 10 9 24 24 H 1.08999 * 109.47140 * 60.00759 * 12 11 10 25 25 H 1.09001 * 109.47305 * 300.00541 * 12 11 10 26 26 H 1.08010 * 126.27801 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6365 0.0009 12 6 6.0170 -4.0079 0.0014 13 6 7.5235 -3.9678 0.0020 14 7 8.2937 -3.9478 1.0524 15 7 9.5246 -3.9153 0.6788 16 6 9.5813 -3.9140 -0.6227 17 8 8.3187 -3.9469 -1.0808 18 1 -0.4850 0.8400 0.0004 19 1 3.8745 -0.6800 0.8910 20 1 3.8752 -0.6804 -0.8889 21 1 3.6586 -3.1502 -0.8893 22 1 3.6579 -3.1506 0.8907 23 1 5.8522 -2.1105 0.7824 24 1 5.6676 -4.5316 -0.8884 25 1 5.6675 -4.5310 0.8916 26 1 10.4788 -3.8908 -1.2233 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393317016.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = 7.190531 kcal Electronic energy + Delta-G solvation = -11728.508172 eV Core-core repulsion = 9422.097143 eV Total energy + Delta-G solvation = -2306.411029 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.22702 -37.87166 -37.18897 -35.15006 -33.24392 -31.34493 -27.95479 -25.31662 -24.71474 -23.14811 -22.30996 -18.98497 -18.63214 -18.28621 -17.20420 -16.48717 -16.24382 -15.91561 -15.27765 -14.73226 -14.45333 -13.82474 -13.47493 -13.16870 -12.92631 -12.90749 -12.09202 -12.03889 -11.86089 -11.69283 -11.41283 -10.84190 -10.76386 -9.55945 -8.29260 -6.33549 0.16908 1.33307 1.38155 1.39350 1.44420 1.51364 2.36955 2.90558 3.06721 3.32824 3.64186 3.97684 4.19700 4.38209 4.45538 4.53947 4.63395 4.77119 4.95383 5.23148 5.47167 5.61665 5.89788 6.17172 6.31104 6.74889 7.24901 7.31529 8.87080 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.072755 B = 0.006265 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.758281 B = 4468.547137 C = 4670.118192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.039 0.961 9 C -0.008 4.008 10 C 0.088 3.912 11 N -0.693 5.693 12 C 0.152 3.848 13 C 0.178 3.822 14 N -0.318 5.318 15 N -0.339 5.339 16 C 0.167 3.833 17 O -0.226 6.226 18 H 0.267 0.733 19 H 0.018 0.982 20 H 0.022 0.978 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.345 0.655 24 H 0.123 0.877 25 H 0.092 0.908 26 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.923 -7.124 -2.929 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.057 0.943 9 C -0.046 4.046 10 C -0.040 4.040 11 N -0.326 5.326 12 C 0.022 3.978 13 C -0.034 4.034 14 N -0.166 5.166 15 N -0.183 5.183 16 C -0.063 4.063 17 O -0.104 6.104 18 H 0.075 0.925 19 H 0.036 0.964 20 H 0.041 0.959 21 H 0.091 0.909 22 H 0.051 0.949 23 H 0.163 0.837 24 H 0.141 0.859 25 H 0.110 0.890 26 H 0.329 0.671 Dipole moment (debyes) X Y Z Total from point charges 18.202 -6.959 -2.367 19.631 hybrid contribution -0.599 0.504 -0.260 0.825 sum 17.603 -6.455 -2.627 18.932 Atomic orbital electron populations 1.70054 1.08227 1.28182 1.52569 1.25959 0.95575 1.03428 0.94139 0.85643 0.79363 0.78396 0.79108 1.19300 1.21134 1.17272 1.21395 0.91755 0.93390 1.50476 0.94308 1.19461 0.93699 0.94535 0.96884 1.21705 0.83941 0.97851 1.00508 1.60536 1.09199 1.12165 1.50737 1.20448 0.79273 0.92370 1.05730 1.28176 0.97781 0.98177 0.79312 1.74371 0.96875 1.18591 1.26729 1.74287 1.12303 1.19152 1.12562 1.30873 0.87458 0.96001 0.92007 1.84889 1.18504 1.68755 1.38243 0.92464 0.96359 0.95942 0.90856 0.94897 0.83718 0.85917 0.89025 0.67056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.81 15 2 C 0.01 0.35 5.47 84.65 0.46 0.81 15 3 Si 0.95 44.28 27.47 68.60 1.88 46.17 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 15 7 C -0.53 -30.00 9.66 25.60 0.25 -29.76 15 8 H 0.04 2.38 7.99 -2.91 -0.02 2.35 15 9 C -0.01 -0.36 4.30 29.85 0.13 -0.23 15 10 C 0.09 3.18 5.62 86.30 0.49 3.66 15 11 N -0.69 -20.83 6.49 -517.94 -3.36 -24.19 15 12 C 0.15 3.58 6.31 85.56 0.54 4.12 15 13 C 0.18 4.51 7.99 88.34 0.71 5.21 15 14 N -0.32 -9.22 12.22 -165.50 -2.02 -11.24 15 15 N -0.34 -8.67 12.22 -175.40 -2.14 -10.82 15 16 C 0.17 2.78 13.37 130.47 1.74 4.53 15 17 O -0.23 -4.93 10.87 -3.59 -0.04 -4.97 15 18 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 19 H 0.02 0.82 7.20 -2.39 -0.02 0.80 15 20 H 0.02 1.02 7.57 -2.38 -0.02 1.00 15 21 H 0.07 2.61 8.14 -2.38 -0.02 2.59 15 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.34 10.41 8.72 -89.69 -0.78 9.63 15 24 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.31 0.85 8.06 -2.91 -0.02 0.82 15 Total: -1.00 -71.26 237.13 -0.72 -71.98 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 0.35 Total: 3.54 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.31 Total: -11.65 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -7.23 Total: -105.06 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.04 Total: -4.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Total: -71.26 -0.72 -71.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393317016.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.170 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds