Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48493 * 109.47069 * 270.00011 * 3 2 1 5 5 H 1.48498 * 109.46778 * 30.00377 * 3 2 1 6 6 H 1.48505 * 109.46868 * 150.00107 * 3 2 1 7 7 C 1.38812 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99898 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00238 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99993 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.45648 * 34.30043 * 10 9 7 12 12 C 1.54547 * 110.62590 * 271.62059 * 10 9 7 13 13 O 1.44611 * 105.01045 * 217.63742 * 12 10 9 14 14 C 1.43353 * 105.23657 * 39.15674 * 13 12 10 15 15 C 1.52816 * 115.70016 * 90.40681 * 14 13 12 16 16 C 1.53949 * 86.78945 * 92.86402 * 15 14 13 17 17 C 1.52797 * 115.72678 * 191.39174 * 14 13 12 18 18 C 1.53554 * 106.12770 * 320.92437 * 14 13 12 19 19 H 0.97000 * 119.99872 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99746 * 0.02562 * 9 7 2 21 21 H 1.09002 * 110.33082 * 336.51673 * 12 10 9 22 22 H 1.08996 * 110.33548 * 98.75039 * 12 10 9 23 23 H 1.09002 * 113.66019 * 207.34072 * 15 14 13 24 24 H 1.09001 * 113.65695 * 338.38587 * 15 14 13 25 25 H 1.08994 * 113.59098 * 270.12409 * 16 15 14 26 26 H 1.09002 * 113.58701 * 139.30586 * 16 15 14 27 27 H 1.09005 * 113.66084 * 21.63219 * 17 14 13 28 28 H 1.08994 * 113.66233 * 152.68506 * 17 14 13 29 29 H 1.08997 * 110.56896 * 264.25987 * 18 14 13 30 30 H 1.09002 * 110.57336 * 141.38971 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5716 -3.2229 -0.5762 12 6 4.3493 -2.9626 1.4448 13 8 5.6722 -3.5466 1.4294 14 6 6.4541 -2.6863 0.5906 15 6 7.1696 -1.5387 1.3020 16 6 8.3831 -2.4794 1.4139 17 6 7.8263 -3.2228 0.1860 18 6 5.5372 -2.2741 -0.5702 19 1 -0.4850 0.8401 0.0004 20 1 3.8645 -0.3622 -0.0007 21 1 4.3135 -2.1243 2.1405 22 1 3.6071 -3.7132 1.7163 23 1 7.3456 -0.6714 0.6656 24 1 6.7284 -1.2774 2.2639 25 1 8.3866 -3.0806 2.3231 26 1 9.3368 -1.9850 1.2290 27 1 7.9101 -4.3074 0.2561 28 1 8.1871 -2.8293 -0.7643 29 1 5.6977 -2.9206 -1.4330 30 1 5.7024 -1.2302 -0.8366 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575523065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = -30.285800 kcal Electronic energy + Delta-G solvation = -12863.030804 eV Core-core repulsion = 10658.535023 eV Total energy + Delta-G solvation = -2204.495781 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.42931 -37.53867 -36.08283 -33.74322 -31.05814 -28.38339 -26.63313 -25.39740 -23.65900 -21.91794 -20.19484 -19.73445 -17.18777 -16.95302 -16.61222 -16.03368 -15.82230 -15.08679 -14.83305 -14.34701 -13.80752 -13.47709 -13.25495 -13.08283 -12.80572 -12.47595 -12.15688 -12.01413 -11.84108 -11.73804 -11.54350 -11.00949 -10.98843 -10.48520 -9.38524 -8.05711 -5.41211 1.36381 1.40051 1.47211 2.45865 2.81490 3.23999 3.55305 3.63183 3.71296 3.85677 3.92993 4.13227 4.26620 4.35499 4.52613 4.73709 4.82208 4.83320 4.87113 5.05352 5.08708 5.12776 5.16046 5.33306 5.40739 5.71459 6.02991 6.18880 7.02778 7.76772 7.97108 9.15432 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055539 B = 0.009945 C = 0.009114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.033136 B = 2814.799634 C = 3071.616920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.740 5.740 10 C 0.144 3.856 11 H 0.059 0.941 12 C 0.033 3.967 13 O -0.368 6.368 14 C 0.066 3.934 15 C -0.162 4.162 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.140 4.140 19 H 0.259 0.741 20 H 0.368 0.632 21 H 0.049 0.951 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.049 -3.176 0.303 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.370 4.370 8 H 0.076 0.924 9 N -0.384 5.384 10 C 0.035 3.965 11 H 0.077 0.923 12 C -0.047 4.047 13 O -0.287 6.287 14 C 0.026 3.974 15 C -0.199 4.199 16 C -0.164 4.164 17 C -0.156 4.156 18 C -0.179 4.179 19 H 0.068 0.932 20 H 0.202 0.798 21 H 0.067 0.933 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.909 -3.466 0.408 18.245 hybrid contribution -0.588 1.131 0.150 1.284 sum 17.321 -2.335 0.558 17.486 Atomic orbital electron populations 1.69883 1.07182 1.26823 1.59252 1.25521 0.96122 1.01348 1.02281 0.85409 0.78638 0.79463 0.78277 1.20077 1.22243 1.17622 1.19061 0.82476 0.93601 1.41879 0.92435 1.42722 1.02514 1.03276 1.89908 1.21731 0.92615 0.88025 0.94115 0.92294 1.24143 0.83756 0.97686 0.99091 1.88851 1.21602 1.48539 1.69708 1.22917 0.92219 0.92288 0.89950 1.23418 0.97766 0.97688 1.01044 1.22783 0.97721 0.97653 0.98234 1.22967 0.91513 1.01347 0.99745 1.23005 0.93124 1.03051 0.98673 0.93226 0.79806 0.93305 0.89953 0.88074 0.92570 0.90695 0.89165 0.90573 0.86733 0.88835 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.76 13.97 21.65 0.30 -62.46 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.96 44.90 27.74 68.60 1.90 46.80 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 7 C -0.24 -13.60 10.45 84.03 0.88 -12.72 16 8 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 9 N -0.74 -34.31 4.96 -317.67 -1.57 -35.88 16 10 C 0.14 5.59 3.78 46.11 0.17 5.76 16 11 H 0.06 2.40 8.10 -2.39 -0.02 2.38 16 12 C 0.03 1.21 7.37 72.51 0.53 1.75 16 13 O -0.37 -12.53 11.43 -148.98 -1.70 -14.23 16 14 C 0.07 1.84 1.13 -10.74 -0.01 1.83 16 15 C -0.16 -4.00 7.57 30.85 0.23 -3.77 16 16 C -0.13 -2.52 8.09 31.23 0.25 -2.27 16 17 C -0.12 -2.45 7.61 30.85 0.23 -2.21 16 18 C -0.14 -4.18 6.24 31.37 0.20 -3.99 16 19 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 20 H 0.37 16.19 5.40 -92.71 -0.50 15.69 16 21 H 0.05 1.93 8.06 -2.39 -0.02 1.91 16 22 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 23 H 0.10 2.20 7.97 -2.39 -0.02 2.18 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.09 2.45 8.11 -2.39 -0.02 2.43 16 30 H 0.08 2.41 7.38 -2.39 -0.02 2.39 16 Total: -1.00 -65.76 246.79 2.44 -63.32 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.56 Total: 21.18 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 2.96 Total: -18.73 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -1.27 Total: -98.34 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.70 Total: -14.23 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -65.76 2.44 -63.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575523065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.031 kcal (2) G-P(sol) polarization free energy of solvation -65.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds