Wall clock time and date at job start Mon Mar 30 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54405 * 112.49091 * 2 1 4 4 O 1.44393 * 104.89643 * 98.03270 * 3 2 1 5 5 C 1.45473 * 105.63292 * 40.42867 * 4 3 2 6 6 C 1.54405 * 104.36944 * 319.92162 * 5 4 3 7 7 H 1.09004 * 112.49071 * 260.97642 * 6 5 4 8 8 C 1.53747 * 109.03753 * 135.51561 * 6 5 4 9 9 N 1.47197 * 106.43164 * 229.61318 * 8 6 5 10 10 C 1.36934 * 126.70086 * 211.40062 * 9 8 6 11 11 H 1.08002 * 119.99688 * 180.02562 * 10 9 8 12 12 C 1.38809 * 120.00328 * 0.02562 * 10 9 8 13 13 N 1.31614 * 119.99799 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00010 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47197 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46527 * 120.00394 * 14 12 10 17 17 H 1.48491 * 109.47355 * 240.00343 * 14 12 10 18 18 C 1.47202 * 106.59090 * 31.37840 * 9 8 6 19 19 H 1.08995 * 109.46982 * 302.97404 * 1 2 3 20 20 H 1.09001 * 109.47197 * 62.97508 * 1 2 3 21 21 H 1.09002 * 109.46814 * 182.97604 * 1 2 3 22 22 H 1.09000 * 110.35994 * 216.89067 * 3 2 1 23 23 H 1.08997 * 110.35737 * 339.17988 * 3 2 1 24 24 H 1.09007 * 110.92119 * 201.07923 * 5 4 3 25 25 H 1.08999 * 110.28912 * 78.45130 * 5 4 3 26 26 H 1.08999 * 110.06396 * 348.85480 * 8 6 5 27 27 H 1.08998 * 110.06677 * 110.37109 * 8 6 5 28 28 H 0.97006 * 120.00091 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.05872 * 209.37519 * 18 9 8 30 30 H 1.08999 * 110.10683 * 87.88652 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1207 1.4266 0.0000 4 8 2.4428 1.6950 1.3817 5 6 3.0026 0.4569 1.9013 6 6 2.1273 -0.6512 1.2768 7 1 1.3600 -1.0121 1.9616 8 6 3.0369 -1.7807 0.7662 9 7 2.6149 -2.0628 -0.6155 10 6 2.6642 -3.2724 -1.2555 11 1 2.3244 -3.3570 -2.2771 12 6 3.1509 -4.3898 -0.5911 13 7 3.5645 -4.2868 0.6541 14 14 3.2175 -6.0400 -1.4640 15 1 2.6977 -5.8898 -2.8470 16 1 4.6227 -6.5176 -1.5129 17 1 2.3855 -7.0242 -0.7263 18 6 2.1290 -0.7907 -1.1746 19 1 -0.3633 0.5593 0.8621 20 1 -0.3633 0.4669 -0.9155 21 1 -0.3633 -1.0263 0.0534 22 1 3.0209 1.4643 -0.6134 23 1 1.3832 2.1423 -0.3632 24 1 2.9353 0.4255 2.9889 25 1 4.0388 0.3471 1.5815 26 1 4.0779 -1.4579 0.7806 27 1 2.9120 -2.6698 1.3842 28 1 3.9043 -5.0677 1.1185 29 1 1.3632 -0.9811 -1.9264 30 1 2.9563 -0.2352 -1.6162 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595756924.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:33 Heat of formation + Delta-G solvation = -39.963752 kcal Electronic energy + Delta-G solvation = -13237.975130 eV Core-core repulsion = 11033.059682 eV Total energy + Delta-G solvation = -2204.915449 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.22268 -37.40997 -34.67579 -32.46990 -31.71398 -27.99824 -26.87328 -26.72507 -23.44118 -22.15134 -20.14670 -18.79498 -17.27648 -16.64641 -16.42658 -16.15097 -15.49178 -14.76844 -14.51966 -14.26010 -13.70721 -13.51360 -13.12927 -13.00861 -12.75044 -12.51771 -12.14699 -11.89190 -11.55706 -11.49255 -11.45248 -11.27544 -10.82176 -10.67476 -8.94515 -7.76739 -5.25672 1.46339 1.47100 1.57535 2.47797 3.02535 3.29663 3.52340 3.66770 3.92263 4.05181 4.20821 4.25465 4.42033 4.60247 4.74118 4.75824 4.83748 4.89699 4.95127 5.08923 5.12740 5.25508 5.41278 5.45305 5.53397 5.77305 5.84567 6.33545 7.07964 7.74609 8.42463 9.22260 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061663 B = 0.010933 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.974474 B = 2560.341271 C = 2781.247365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C 0.061 3.939 4 O -0.393 6.393 5 C 0.060 3.940 6 C -0.132 4.132 7 H 0.083 0.917 8 C 0.144 3.856 9 N -0.620 5.620 10 C -0.235 4.235 11 H 0.084 0.916 12 C -0.069 4.069 13 N -0.949 5.949 14 Si 0.982 3.018 15 H -0.266 1.266 16 H -0.293 1.293 17 H -0.290 1.290 18 C 0.138 3.862 19 H 0.067 0.933 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.054 0.946 26 H -0.011 1.011 27 H 0.090 0.910 28 H 0.248 0.752 29 H 0.049 0.951 30 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 8.762 -0.349 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.015 4.015 4 O -0.312 6.312 5 C -0.017 4.017 6 C -0.152 4.152 7 H 0.101 0.899 8 C 0.018 3.982 9 N -0.344 5.344 10 C -0.364 4.364 11 H 0.101 0.899 12 C -0.261 4.261 13 N -0.599 5.599 14 Si 0.811 3.189 15 H -0.190 1.190 16 H -0.220 1.220 17 H -0.217 1.217 18 C 0.012 3.988 19 H 0.086 0.914 20 H 0.094 0.906 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.133 0.867 24 H 0.125 0.875 25 H 0.072 0.928 26 H 0.006 0.994 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.274 8.740 -0.247 9.732 hybrid contribution 0.483 -1.318 -0.393 1.458 sum -3.792 7.422 -0.640 8.359 Atomic orbital electron populations 1.21527 0.91460 1.01346 1.02738 1.22716 0.97472 0.95250 0.95040 1.23620 0.99541 0.95100 0.83289 1.89134 1.82714 1.33937 1.25391 1.23705 0.95913 0.82104 0.99963 1.23458 0.98282 0.96680 0.96763 0.89878 1.21769 0.92135 0.97203 0.87074 1.44871 1.73615 1.04537 1.11414 1.19538 1.34979 0.85388 0.96471 0.89867 1.25639 1.01502 1.01576 0.97350 1.69880 1.49675 1.28810 1.11583 0.84944 0.76859 0.79180 0.77955 1.19028 1.21971 1.21742 1.21622 0.95818 0.86671 0.94673 0.91388 0.90607 0.94010 0.92522 0.86717 0.87518 0.92820 0.99355 0.89221 0.94200 0.93299 0.95983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 8.66 71.98 0.62 -2.71 16 2 C -0.10 -3.58 1.11 -50.67 -0.06 -3.64 16 3 C 0.06 1.83 6.82 72.46 0.49 2.33 16 4 O -0.39 -12.95 11.67 -148.98 -1.74 -14.69 16 5 C 0.06 2.01 7.27 72.46 0.53 2.54 16 6 C -0.13 -5.13 3.77 -9.28 -0.03 -5.16 16 7 H 0.08 3.19 7.94 -2.38 -0.02 3.17 16 8 C 0.14 7.18 5.78 86.50 0.50 7.68 16 9 N -0.62 -32.34 3.39 -695.57 -2.36 -34.70 16 10 C -0.24 -13.22 10.34 84.03 0.87 -12.35 16 11 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 12 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 13 N -0.95 -56.60 10.07 21.65 0.22 -56.38 16 14 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 18 C 0.14 5.70 6.47 86.49 0.56 6.26 16 19 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 20 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.72 7.14 -2.39 -0.02 1.71 16 23 H 0.11 2.73 7.91 -2.39 -0.02 2.71 16 24 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 25 H 0.05 1.90 7.14 -2.39 -0.02 1.88 16 26 H -0.01 -0.60 7.09 -2.39 -0.02 -0.62 16 27 H 0.09 5.12 5.43 -2.39 -0.01 5.10 16 28 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 29 H 0.05 1.94 7.86 -2.39 -0.02 1.92 16 30 H 0.02 0.91 7.08 -2.39 -0.02 0.89 16 Total: -1.00 -63.54 238.01 3.21 -60.34 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.11 Total: 6.30 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 3.95 Total: -8.48 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.14 Total: -91.08 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.74 Total: -14.69 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -63.54 3.21 -60.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595756924.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.371 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds