Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46907 * 300.00545 * 3 2 1 6 6 H 1.48500 * 109.46977 * 60.00546 * 3 2 1 7 7 C 1.38809 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00468 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99651 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.94977 * 336.41231 * 10 9 7 12 12 C 1.53954 * 113.65895 * 107.81464 * 10 9 7 13 13 C 1.53955 * 87.29005 * 139.21040 * 12 10 9 14 14 H 1.08999 * 113.66562 * 89.73867 * 13 12 10 15 15 O 1.42902 * 113.65867 * 220.79547 * 13 12 10 16 16 C 1.52906 * 113.66253 * 205.00519 * 10 9 7 17 17 C 1.52906 * 121.14442 * 94.90748 * 16 10 9 18 18 C 1.53952 * 86.88366 * 209.42220 * 17 16 10 19 19 C 1.53102 * 121.20422 * 346.38323 * 16 10 9 20 20 H 0.96996 * 119.99590 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99998 * 0.02562 * 9 7 2 22 22 H 1.08994 * 113.57830 * 24.60693 * 12 10 9 23 23 H 1.08996 * 113.64884 * 253.82294 * 12 10 9 24 24 H 0.96708 * 113.99594 * 277.18852 * 15 13 12 25 25 H 1.09002 * 113.66421 * 94.90439 * 17 16 10 26 26 H 1.08998 * 113.66230 * 323.94207 * 17 16 10 27 27 H 1.09007 * 113.57685 * 139.28894 * 18 17 16 28 28 H 1.08994 * 113.58377 * 270.08447 * 18 17 16 29 29 H 1.08998 * 113.57982 * 36.05296 * 19 16 10 30 30 H 1.08999 * 113.80409 * 265.03356 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0672 -3.5650 -0.4022 12 6 1.9933 -4.4076 1.3420 13 6 1.8251 -5.7024 0.5263 14 1 2.7687 -6.1855 0.2727 15 8 0.8665 -6.6072 1.0781 16 6 1.2657 -4.8229 -0.5925 17 6 1.4197 -5.2189 -2.0614 18 6 -0.0388 -5.7071 -1.9956 19 6 -0.2420 -4.7149 -0.8361 20 1 -0.4849 0.8400 0.0004 21 1 0.3555 -2.3880 -0.0005 22 1 1.1195 -4.1535 1.9419 23 1 2.9225 -4.3679 1.9103 24 1 1.2151 -7.1659 1.7863 25 1 2.1418 -6.0187 -2.2255 26 1 1.5675 -4.3707 -2.7299 27 1 -0.6206 -5.4637 -2.8847 28 1 -0.1362 -6.7511 -1.6981 29 1 -0.5616 -3.7241 -1.1591 30 1 -0.8487 -5.1116 -0.0221 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595777002.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = 2.793771 kcal Electronic energy + Delta-G solvation = -12900.344922 eV Core-core repulsion = 10697.283579 eV Total energy + Delta-G solvation = -2203.061343 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03357 -35.67655 -34.52823 -32.59035 -29.76782 -25.27750 -24.53675 -23.91596 -22.05442 -20.29754 -17.64567 -17.06914 -17.00604 -15.18812 -14.96041 -14.51230 -13.72431 -13.26605 -12.78513 -12.42752 -12.07067 -11.75086 -11.43775 -11.08197 -10.93556 -10.77998 -10.66051 -10.11808 -10.05447 -9.95691 -9.60894 -9.46161 -9.04736 -8.77925 -6.92580 -5.76862 -3.05129 3.43148 3.48703 3.51070 4.45639 4.63968 4.97690 5.12061 5.18363 5.31113 5.37443 5.47590 5.78716 5.86890 6.02121 6.12701 6.14619 6.22588 6.33464 6.39086 6.45373 6.61010 6.68460 6.93986 7.08640 7.12541 7.71095 7.97365 8.42097 9.53320 10.12221 10.47424 11.45714 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051505 B = 0.009851 C = 0.009219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.506472 B = 2841.654840 C = 3036.319173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.707 5.707 10 C 0.178 3.822 11 H 0.077 0.923 12 C -0.193 4.193 13 C 0.096 3.904 14 H 0.074 0.926 15 O -0.558 6.558 16 C -0.107 4.107 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.103 4.103 20 H 0.255 0.745 21 H 0.387 0.613 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.368 0.632 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -11.576 -0.624 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.066 3.934 11 H 0.095 0.905 12 C -0.235 4.235 13 C 0.037 3.963 14 H 0.091 0.909 15 O -0.362 6.362 16 C -0.108 4.108 17 C -0.162 4.162 18 C -0.175 4.175 19 C -0.141 4.141 20 H 0.065 0.935 21 H 0.223 0.777 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.214 0.786 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.772 -11.091 -1.090 11.484 hybrid contribution 0.570 0.655 0.526 1.015 sum 3.342 -10.436 -0.564 10.973 Atomic orbital electron populations 1.69674 1.05117 1.25590 1.57612 1.24758 0.95518 0.97727 1.02935 0.86120 0.78789 0.84131 0.77169 1.20545 1.21876 1.21881 1.19363 0.91108 0.84193 1.42683 0.91056 1.42343 1.05911 0.99492 1.86788 1.21110 0.94931 0.85062 0.92306 0.90459 1.24474 1.01484 0.96955 1.00545 1.22952 0.90672 0.87838 0.94865 0.90873 1.86530 1.39734 1.54450 1.55493 1.23200 0.98103 0.96635 0.92904 1.22711 0.96554 1.00355 0.96582 1.22795 0.96872 0.99159 0.98669 1.22357 0.94374 0.99550 0.97788 0.93514 0.77744 0.89795 0.92665 0.78619 0.92439 0.89737 0.92291 0.90789 0.89254 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -18.06 5.30 -52.98 -0.28 -18.34 16 10 C 0.18 3.68 4.36 -67.48 -0.29 3.38 16 11 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 12 C -0.19 -3.53 7.72 -25.74 -0.20 -3.73 16 13 C 0.10 1.51 5.09 -26.28 -0.13 1.38 16 14 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 15 O -0.56 -8.31 12.87 -35.23 -0.45 -8.77 16 16 C -0.11 -1.90 1.08 -154.61 -0.17 -2.07 16 17 C -0.12 -2.00 7.83 -26.28 -0.21 -2.21 16 18 C -0.14 -2.15 8.09 -25.74 -0.21 -2.36 16 19 C -0.10 -1.90 6.87 -26.18 -0.18 -2.08 16 20 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.39 10.51 6.24 -40.82 -0.25 10.25 16 22 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.37 3.71 9.12 45.56 0.42 4.13 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.83 7.03 -51.93 -0.37 1.47 16 30 H 0.07 1.26 7.66 -51.93 -0.40 0.87 16 LS Contribution 249.88 15.07 3.77 3.77 Total: -1.00 -30.82 249.88 -6.43 -37.24 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -3.53 Total: 11.36 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.63 Total: -15.10 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.44 Total: -45.97 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.45 Total: -8.77 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.82 -6.43 -37.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595777002.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.038 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds