Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46907 * 300.00545 * 3 2 1 6 6 H 1.48500 * 109.46977 * 60.00546 * 3 2 1 7 7 C 1.38809 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00468 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99651 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.94977 * 336.41231 * 10 9 7 12 12 C 1.53954 * 113.65895 * 107.81464 * 10 9 7 13 13 C 1.53955 * 87.29005 * 139.21040 * 12 10 9 14 14 H 1.08999 * 113.66562 * 89.73867 * 13 12 10 15 15 O 1.42902 * 113.65867 * 220.79547 * 13 12 10 16 16 C 1.52906 * 113.66253 * 205.00519 * 10 9 7 17 17 C 1.52906 * 121.14442 * 94.90748 * 16 10 9 18 18 C 1.53952 * 86.88366 * 209.42220 * 17 16 10 19 19 C 1.53102 * 121.20422 * 346.38323 * 16 10 9 20 20 H 0.96996 * 119.99590 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99998 * 0.02562 * 9 7 2 22 22 H 1.08994 * 113.57830 * 24.60693 * 12 10 9 23 23 H 1.08996 * 113.64884 * 253.82294 * 12 10 9 24 24 H 0.96708 * 113.99594 * 277.18852 * 15 13 12 25 25 H 1.09002 * 113.66421 * 94.90439 * 17 16 10 26 26 H 1.08998 * 113.66230 * 323.94207 * 17 16 10 27 27 H 1.09007 * 113.57685 * 139.28894 * 18 17 16 28 28 H 1.08994 * 113.58377 * 270.08447 * 18 17 16 29 29 H 1.08998 * 113.57982 * 36.05296 * 19 16 10 30 30 H 1.08999 * 113.80409 * 265.03356 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0672 -3.5650 -0.4022 12 6 1.9933 -4.4076 1.3420 13 6 1.8251 -5.7024 0.5263 14 1 2.7687 -6.1855 0.2727 15 8 0.8665 -6.6072 1.0781 16 6 1.2657 -4.8229 -0.5925 17 6 1.4197 -5.2189 -2.0614 18 6 -0.0388 -5.7071 -1.9956 19 6 -0.2420 -4.7149 -0.8361 20 1 -0.4849 0.8400 0.0004 21 1 0.3555 -2.3880 -0.0005 22 1 1.1195 -4.1535 1.9419 23 1 2.9225 -4.3679 1.9103 24 1 1.2151 -7.1659 1.7863 25 1 2.1418 -6.0187 -2.2255 26 1 1.5675 -4.3707 -2.7299 27 1 -0.6206 -5.4637 -2.8847 28 1 -0.1362 -6.7511 -1.6981 29 1 -0.5616 -3.7241 -1.1591 30 1 -0.8487 -5.1116 -0.0221 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595777002.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = -19.564217 kcal Electronic energy + Delta-G solvation = -12901.314437 eV Core-core repulsion = 10697.283579 eV Total energy + Delta-G solvation = -2204.030858 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44338 -36.90520 -36.28297 -34.35539 -31.72924 -26.71933 -26.38147 -25.33917 -23.69225 -21.73844 -19.45046 -18.70011 -18.31842 -16.75000 -16.42961 -16.25498 -15.39571 -15.01044 -14.27790 -13.91071 -13.68563 -13.17830 -12.99109 -12.86717 -12.77469 -12.25978 -12.18643 -12.03852 -11.86082 -11.51816 -11.07137 -10.94932 -10.78043 -10.34219 -8.96282 -7.95200 -5.23460 1.46216 1.47135 1.57287 2.55036 3.28079 3.36080 3.57886 3.75021 3.89695 4.01500 4.02419 4.23643 4.32137 4.60088 4.68995 4.73967 4.84456 4.97616 5.00820 5.09379 5.15070 5.23362 5.46841 5.54516 5.58841 5.73694 6.26977 7.03891 7.32760 8.10681 8.34195 9.28709 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051505 B = 0.009851 C = 0.009219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.506472 B = 2841.654840 C = 3036.319173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.723 5.723 10 C 0.156 3.844 11 H 0.082 0.918 12 C -0.190 4.190 13 C 0.121 3.879 14 H 0.110 0.890 15 O -0.569 6.569 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.113 4.113 20 H 0.250 0.750 21 H 0.374 0.626 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.392 0.608 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 -13.274 -0.812 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.361 5.361 10 C 0.046 3.954 11 H 0.100 0.900 12 C -0.231 4.231 13 C 0.062 3.938 14 H 0.128 0.872 15 O -0.377 6.377 16 C -0.113 4.113 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.151 4.151 20 H 0.059 0.941 21 H 0.207 0.793 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.242 0.758 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.437 -12.853 -1.263 13.656 hybrid contribution 0.066 1.102 0.625 1.269 sum 4.503 -11.750 -0.638 12.600 Atomic orbital electron populations 1.69841 1.06738 1.25941 1.59763 1.25593 0.96369 1.01194 1.03901 0.85057 0.78335 0.79744 0.76539 1.18777 1.22132 1.22227 1.19783 0.91609 0.85308 1.40689 0.90320 1.42524 1.05499 1.00766 1.87285 1.21494 0.95207 0.84120 0.94582 0.90005 1.24301 1.01065 0.98447 0.99252 1.22750 0.91705 0.87061 0.92334 0.87235 1.86478 1.40114 1.54482 1.56576 1.23215 0.97033 0.96038 0.94966 1.22656 0.97560 1.00650 0.94672 1.22736 0.96600 0.99045 0.97550 1.22296 0.95018 0.98747 0.98994 0.94089 0.79283 0.92527 0.91097 0.75833 0.89512 0.91246 0.91443 0.89118 0.92579 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.24 -13.69 9.97 84.03 0.84 -12.85 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.72 -37.70 5.30 -321.54 -1.70 -39.41 16 10 C 0.16 6.33 4.36 45.28 0.20 6.53 16 11 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 12 C -0.19 -6.67 7.72 31.23 0.24 -6.42 16 13 C 0.12 3.41 5.09 30.89 0.16 3.56 16 14 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 15 O -0.57 -15.04 12.87 -148.98 -1.92 -16.96 16 16 C -0.11 -3.78 1.08 -52.25 -0.06 -3.84 16 17 C -0.12 -3.51 7.83 30.88 0.24 -3.26 16 18 C -0.12 -3.56 8.09 31.23 0.25 -3.31 16 19 C -0.11 -4.15 6.87 30.95 0.21 -3.94 16 20 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.37 21.19 6.24 -92.71 -0.58 20.61 16 22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.39 6.34 9.12 -74.05 -0.68 5.67 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.42 7.03 -2.39 -0.02 2.40 16 30 H 0.06 2.20 7.66 -2.39 -0.02 2.18 16 Total: -1.00 -66.96 249.88 1.12 -65.84 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.12 Total: 30.06 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 2.55 Total: -27.66 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -1.42 Total: -100.11 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.92 Total: -16.96 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -66.96 1.12 -65.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595777002.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.272 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds